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Genomics

Range of open access peer reviewed Genomics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 718 for Genomics

Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis
Arunima Shilpi, Yingtao Bi, Segun Jung, Samir K. Patra and Ramana V. Davuluri
Cancer Informatics 2017:16 1-13
Original Research | Published on 09 Jan 2017



Molecular Modeling and Phylogeny of the Krüppel-like Factor 4 (cKLF4) Protein from the Arabian Camel, Camelus dromedarius
Abdullah O. Alawad, Sultan N. Alharbi, Othman A. Alhazzaa, Faisal S. Alagrafi, Mohammad N. Alkhrayef, Ziyad A. Alhamdan, Abdullah D. Alenazi, Mohamed Hammad, Sami A. Alyahya, Hasan A. AlJohi and Ibrahim O. Alanazi
Bioinformatics and Biology Insights 2016:10 291-300
Original Research | Published on 21 Dec 2016



Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation
Mudra Choudhury and Stephen A. Ramsey
Gene Regulation and Systems Biology 2016:10 105-110
Methodology | Published on 13 Dec 2016



KRAS Mutation as a Potential Prognostic Biomarker of Biliary Tract Cancers
Masaaki Yokoyama, Hiroaki Ohnishi, Kouki Ohtsuka, Satsuki Matsushima, Yasuo Ohkura, Junji Furuse, Takashi Watanabe, Toshiyuki Mori and Masanori Sugiyama
Japanese Clinical Medicine 2016:7 33-39
Original Research | Published on 13 Dec 2016



Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization
Yong Wang, Xia-Fang Tao, Zhi-Xi Su, A-Ke Liu, Tian-Lei Liu, Ling Sun, Qin Yao, Ke-Ping Chen and Xun Gu
Evolutionary Bioinformatics 2016:12 303-312
Short Report | Published on 12 Dec 2016



Prognostic Value of MammaPrint® in Invasive Lobular Breast Cancer
Inès J. Beumer, Marion Persoon, Anke Witteveen, Christa Dreezen, Suet-Feung Chin, Stephen-John Sammut, Mireille Snel, Carlos Caldas, Sabine Linn, Laura J. van 't Veer, Rene Bernards and Annuska M. Glas
Biomarker Insights 2016:11 139-146
Original Research | Published on 11 Dec 2016



A Novel Homozygous Frameshift Mutation in Exon 2 of LEP Gene Associated with Severe Obesity: A Case Report
Ashwaq Shukri Altawil, Horia Ahmad Mawlawi, Khalid Ateeq Alghamdi and Faten Fohaid Almijmaj
Clinical Medicine Insights: Pediatrics 2016:10 115-118
Case report | Published on 11 Dec 2016



Support Vector Machines Trained with Evolutionary Algorithms Employing Kernel Adatron for Large Scale Classification of Protein Structures
Nancy Arana-Daniel, Alberto A. Gallegos, Carlos López-Franco, Alma Y. Alanís, Jacob Morales and Adriana López-Franco
Evolutionary Bioinformatics 2016:12 285-302
Original Research | Published on 04 Dec 2016



Integrating Epigenomics into the Understanding of Biomedical Insight
Yixing Han and Ximiao He
Bioinformatics and Biology Insights 2016:10 267-289
Review | Published on 04 Dec 2016



Clustering Algorithms: Their Application to Gene Expression Data
Jelili Oyelade, Itunuoluwa Isewon, Funke Oladipupo, Olufemi Aromolaran, Efosa Uwoghiren, Faridah Ameh, Moses Achas and Ezekiel Adebiyi
Bioinformatics and Biology Insights 2016:10 237-253
Review | Published on 30 Nov 2016



EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers
Alvaro Chiner-Oms and Fernando González-Candelas
Evolutionary Bioinformatics 2016:12 277-284
Original Research | Published on 28 Nov 2016



DNA Methylation of Regulatory Regions of Imprinted Genes at Birth and Its Relation to Infant Temperament
Bernard F. Fuemmeler, Chien-Ti Lee, Adelheid Soubry, Edwin S. Iversen, Zhiqing Huang, Amy P. Murtha, Joellen M. Schildkraut, Randy L. Jirtle, Susan K. Murphy and Cathrine Hoyo
Genetics & Epigenetics 2016:8 59-67
Original Research | Published on 28 Nov 2016



A Comparison of Genome-wide and Exome-wide Somatic Mutation Patterns in Tumors
Emily Mulhern, Robert Vaughn, Mikaela Vega, Edward Abel, Astrid Cerrato, Yashwan Kalainesan, Roxanne Hinch, Sarangan Ravichandran and Brian T. Luke
Journal of Genomes and Exomes 2016:5 9-16
Original Research | Published on 22 Nov 2016



Relationships of Reproductive Traits With the Phylogeny of the African Noctuid Stem Borers
Paul-André Calatayud, Stéphane Dupas, Brigitte Frérot, Gilles Genestier, Peter Ahuya, Claire Capdevielle-Dulac and Bruno Le Ru
International Journal of Insect Science 2016:8 95-103
Original Research | Published on 13 Nov 2016



DNA Methylation of Cellular Retinoic Acid-Binding Proteins in Cervical Cancer
Ana L. Arellano-Ortiz, Mauricio Salcedo-Vargas, Claudia L. Vargas-Requena, José A. López-Díaz, Antonio De la Mora-Covarrubias, Juan C. Silva-Espinoza and Florinda Jiménez-Vega
Genetics & Epigenetics 2016:8 53-57
Original Research | Published on 10 Nov 2016



A Comparative In Silico Study of the Antioxidant Defense Gene Repertoire of Distinct Lifestyle Trypanosomatid Species
Ingrid Thaís Beltrame-Botelho, Carlos Talavera-López, Björn Andersson, Edmundo Carlos Grisard and Patricia Hermes Stoco
Evolutionary Bioinformatics 2016:12 263-275
Original Research | Published on 07 Nov 2016



Semi-Automated Curation Allows Causal Network Model Building for the Quantification of Age-Dependent Plaque Progression in ApoE⁻/⁻ Mouse
Justyna Szostak, Florian Martin, Marja Talikka, Manuel C. Peitsch and Julia Hoeng
Gene Regulation and Systems Biology 2016:10 95-103
Original Research | Published on 06 Nov 2016



A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits
Young-Joo Seol, So Youn Won, Younhee Shin, Jong-Yeol Lee, Jong-Sik Chun, Yong-Kab Kim and Chang-Kug Kim
Evolutionary Bioinformatics 2016:12 253-262
Original Research | Published on 02 Nov 2016



KDM4C Activity Modulates Cell Proliferation and Chromosome Segregation in Triple-Negative Breast Cancer
Jeison Garcia and Fernando Lizcano
Breast Cancer: Basic and Clinical Research 2016:10 169-175
Original Research | Published on 02 Nov 2016



A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching
José R. Romero, Jessica A. Carballido, Ingrid Garbus, Viviana C. Echenique and Ignacio Ponzoni
Evolutionary Bioinformatics 2016:12 247-251
Original Research | Published on 30 Oct 2016



IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment
Rohit Kumar Yadav and Haider Banka
Evolutionary Bioinformatics 2016:12 237-246
Original Research | Published on 27 Oct 2016



A Multifaceted Role for Myd88-Dependent Signaling in Progression of Murine Mammary Carcinoma
Mary J. Higgins, Antonio Serrano, Kofi Y. Boateng, Victoria A. Parsons, Tiffany Phuong, Alyssa Seifert, Jacob M. Ricca, Kyle C. Tucker, Alec S. Eidelman, Maureen A. Carey and Robert A. Kurt
Breast Cancer: Basic and Clinical Research 2016:10 157-167
Original Research | Published on 27 Oct 2016



Cluster Analysis of p53 Binding Site Sequences Reveals Subsets with Different Functions
Ji-Hyun Lim, Natasha S. Latysheva, Richard D. Iggo, and Daniel Barker
Cancer Informatics 2016:15 199-209
Original Research | Published on 25 Oct 2016



Comparative Genomics of Amphibian-like Ranaviruses, Nucleocytoplasmic Large DNA Viruses of Poikilotherms
Stephen J. Price
Evolutionary Bioinformatics 2015:Suppl. 2 71-82
Original Research | Published on 25 Oct 2016



An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters
Stephen A. Ramsey
Bioinformatics and Biology Insights 2015:Suppl. 4 59-69
Methodology | Published on 25 Oct 2016



Iterative Fragmentation Improves the Detection of ChIP-seq Peaks for Inactive Histone Marks
Miklós Laczik, Jan Hendrickx, Anne-Clémence Veillard, Mustafa Tammoh, Sarah Marzi and Dominique Poncelet
Bioinformatics and Biology Insights 2016:10 209-224
Perspective | Published on 25 Oct 2016



Insights on Diversity of Leucine-Rich Repeat (LRR) Domain among Major Blast Resistance Genes of Rice
S.J.S. Rama Devi, B. Umakanth, B. Vishalakshi, Supriya B. Aglawe, V. Ravindra Babu and Maganti S. Madhav
Journal of Genomes and Exomes 2016:5 1-7
Original Research | Published on 20 Oct 2016



A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
Chen Chi, Rasif Ajwad, Qin Kuang and Pingzhao Hu
Cancer Informatics 2016:Suppl. 2 43-50
Methodology | Published on 09 Oct 2016



A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks
Jie Zhou, Pianyu Zhong and Tinghui Zhang
Evolutionary Bioinformatics 2016:12 229-235
Original Research | Published on 06 Oct 2016



Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods
Christopher J. Walsh, Pingzhao Hu, Jane Batt, and Claudia C. dos Santos
Cancer Informatics 2016:Suppl. 2 25-42
Review | Published on 03 Oct 2016



Approaching Long Genomic Regions and Large Recombination Rates with msParSm as an Alternative to MaCS
Carlos Montemuiño, Antonio Espinosa, Juan C. Moure, Gonzalo Vera, Porfidio Hernández and Sebastián Ramos-Onsins
Evolutionary Bioinformatics 2016:12 223-228
Software or database review | Published on 02 Oct 2016



SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes
Pratibha Kottapalli, Mauricio Ulloa, Kameswara Rao Kottapalli, Paxton Payton and John Burke
Genomics Insights 2016:9 51-60
Original Research | Published on 02 Oct 2016



Genomics Study of Mycobacterium tuberculosis Strains from Different Ethnic Populations in Taiwan
Horng-Yunn Dou, Yih-Yuan Chen, Ying-Tsong Chen, Jia-Ru Chang, Chien-Hsing Lin, Keh-Ming Wu, Ming-Shian Lin, Ih-Jen Su and Shih-Feng Tsai
Evolutionary Bioinformatics 2016:12 213-221
Original Research | Published on 27 Sep 2016



Association of MTHFR (C677T) Gene Polymorphism With Breast Cancer in North India
Mohammad Waseem, Syed Rizwan Hussain, Shashank Kumar, Mohammad Serajuddin, Farzana Mahdi, Satyendra Kumar Sonkar, Cherry Bansal and Mohammad Kaleem Ahmad
Biomarkers in Cancer 2016:8 111-117
Original Research | Published on 27 Sep 2016



Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum
Stefan Simm, Klaus-Dieter Scharf, Sridharan Jegadeesan, Maria Luisa Chiusano, Nurit Firon and Enrico Schleiff
Bioinformatics and Biology Insights 2016:10 185-207
Original Research | Published on 26 Sep 2016



Epigenetics and Cellular Metabolism
Wenyi Xu, Fengzhong Wang, Zhongsheng Yu and Fengjiao Xin
Genetics & Epigenetics 2016:8 43-51
Review | Published on 25 Sep 2016



Evolution of Synonymous Codon Usage in the Mitogenomes of Certain Species of Bilaterian Lineage with Special Reference to Chaetognatha
Sudeesh Karumathil, Vijaya R. Dirisala, Uthpala Srinadh, Valaboju Nikhil, N. Satya Sampath Kumar and Rahul R. Nair
Bioinformatics and Biology Insights 2016:10 167-184
Original Research | Published on 22 Sep 2016



Novel Approach to Analyzing MFE of Noncoding RNA Sequences
Tina P. George and Tessamma Thomas
Genomics Insights 2016:9 41-49
Original Research | Published on 18 Sep 2016



Overlapping Group Logistic Regression with Applications to Genetic Pathway Selection
Yaohui Zeng and Patrick Breheny
Cancer Informatics 2016:15 179-187
Methodology | Published on 15 Sep 2016



Archival Collections are Important in the Study of the Biology, Diversity, and Evolution of Arboviruses
Alyssa T. Pyke and David Warrilow
Evolutionary Bioinformatics 2016:Suppl. 2 27-30
Commentary | Published on 14 Sep 2016



DNA Methylation Heterogeneity Patterns in Breast Cancer Cell Lines
Sunny Tian, Karina Bertelsmann, Linda Yu and Shuying Sun
Cancer Informatics 2016:Suppl. 4 1-9
Original Research | Published on 07 Sep 2016



Oncogene Mutations in Colorectal Polyps Identified in the Norwegian Colorectal Cancer Prevention (NORCCAP) Screening Study
Jon A. Lorentzen, Krzysztof Grzyb, Paula M. De Angelis, Geir Hoff, Tor J. Eide and Per Arne Andresen
Clinical Medicine Insights: Pathology 2016:9 19-28
Original Research | Published on 07 Sep 2016



Do the Human Endogenous Retroviruses Play a Role in Colon Cancer?
Lucia Signorini, Sonia Villani, Marco Bregni, Pasquale Ferrante and Serena Delbue
Advances in Tumor Virology 2016:6 11-21
Review | Published on 07 Sep 2016



Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins
Shaik Naseer Pasha, Iyer Meenakshi and Ramanathan Sowdhamini
Evolutionary Bioinformatics 2016:12 201-211
Original Research | Published on 29 Aug 2016



MultiSyn: A Webtool for Multiple Synteny Detection and Visualization of User’s Sequence of Interest Compared to Public Plant Species
Jeong-Ho Baek, Junah Kim, Chang-Kug Kim, Seong-Han Sohn, Dongsu Choi, Milind B. Ratnaparkhe, Do-Wan Kim and Tae-Ho Lee
Evolutionary Bioinformatics 2016:12 193-199
Original Research | Published on 28 Aug 2016



Dysregulation of Protein Kinase Gene Expression in NK Cells from Chronic Fatigue Syndrome/Myalgic Encephalomyelitis Patients
Anu Chacko, Donald R. Staines, Samantha C. Johnston and Sonya M. Marshall-Gradisnik
Gene Regulation and Systems Biology 2016:10 85-93
Original Research | Published on 28 Aug 2016



Provirus Silencing in Stem Cells: The Forbidden Regulators of Cell Fate
Sandeep Satapathy
Signal Transduction Insights 2016:5 15-23
Review | Published on 21 Aug 2016



Genomic Changes in Normal Breast Tissue in Women at Normal Risk or at High Risk for Breast Cancer
David N. Danforth, Jr.
Breast Cancer: Basic and Clinical Research 2016:10 109-146
Review | Published on 17 Aug 2016



Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map
Akimasa Seno, Tomonari Kasai, Masashi Ikeda, Arun Vaidyanath, Junko Masuda, Akifumi Mizutani, Hiroshi Murakami, Tetsuya Ishikawa and Masaharu Seno
Cancer Informatics 2016:15 163-178
Original Research | Published on 16 Aug 2016



The Role of Genomic Profiling in Advanced Breast Cancer: The Two Faces of Janus
Yesim Eralp
Translational Oncogenomics 2016:Suppl. 1 1-7
Review | Published on 14 Aug 2016




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