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Biology

Range of open access peer reviewed Biology journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 859 for Biology

An Assessment of Database-Validated microRNA Target Genes in Normal Colonic Mucosa: Implications for Pathway Analysis
Martha L Slattery, Jennifer S Herrick, John R Stevens, Roger K Wolff, Lila E Mullany
Cancer Informatics 2017:16 1176935117716405
Original Research | Published on 23 Jun 2017



A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation
Lisa M Gandy, Jordan Gumm, Amanda L Blackford, Elana J Fertig, Luis A Diaz
Cancer Informatics 2017:16 1176935117711940
Original Research | Published on 22 Jun 2017



A Quantitative Systems Pharmacology Platform to Investigate the Impact of Alirocumab and Cholesterol-Lowering Therapies on Lipid Profiles and Plaque Characteristics
Jeffrey E Ming, Ruth E Abrams, Derek W Bartlett, Mengdi Tao, Tu Nguyen, Howard Surks, Katherine Kudrycki, Ananth Kadambi, Christina M Friedrich, Nassim Djebli, Britta Goebel, Alex Koszycki, Meera Varshnaya, Joseph Elassal, Poulabi Banerjee, William J Sasiela, Michael J Reed, Jeffrey S Barrett, Karim Azer
Gene Regulation and Systems Biology 2017:11 1177625017710941
Original Research | Published on 22 Jun 2017



The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
Eunji Kim, Ivan Ivanov, Jianping Hua, Johanna W Lampe, Meredith AJ Hullar, Robert S Chapkin, Edward R Dougherty
Cancer Informatics 2017:16 1176935117710530
Methodology | Published on 12 Jun 2017



Tumor RAS Gene Expression Levels Are Influenced by the Mutational Status of RAS Genes and Both Upstream and Downstream RAS Pathway Genes
Robert M Stephens, Ming Yi, Bailey Kessing, Dwight V Nissley, Frank McCormick
Cancer Informatics 2017:16 1176935117711944
Original Research | Published on 08 Jun 2017



A Transcriptional Regulatory Role for the Membrane Type-1 Matrix Metalloproteinase in Carcinogen-Induced Inflammasome Gene Expression
Samuel Sheehy, Borhane Annabi
Gene Regulation and Systems Biology 2017:11 1177625017713996
Original Research | Published on 08 Jun 2017



Overexpression and Knockdown of Hypoxia-Inducible Factor 1 Disrupt the Expression of Steroidogenic Enzyme Genes and Early Embryonic Development in Zebrafish
Tianfeng Tan, Richard Man Kit Yu, Rudolf Shiu Sun Wu, Richard Yuen Chong Kong
Gene Regulation and Systems Biology 2017:11 1177625017713193
Original Research | Published on 08 Jun 2017



Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
Qianyun Li, Faliu Yi, Tao Wang, Guanghua Xiao, Faming Liang
Cancer Informatics 2017:16 1176935117711910
Original Research | Published on 05 Jun 2017



Immune Checkpoint Inhibition and the Prevalence of Autoimmune Disorders Among Patients With Lung and Renal Cancer
Sherif M El-Refai, Joshua D Brown, Esther P Black, Jeffery C Talbert
Cancer Informatics 2017:16 1176935117712520
Original Research | Published on 01 Jun 2017



Sequence Analysis and Phylogenetic Studies of Hypoxia-Inducible Factor-1α
Jagadeesha Poyya, Chandrashekhar G Joshi, D Jagadeesha Kumar, HG Nagendra
Cancer Informatics 2017:16 1176935117712242
Original Research | Published on 31 May 2017



Mechanistic Modelling of Drug-Induced Liver Injury: Investigating the Role of Innate Immune Responses
Lisl KM Shoda, Christina Battista, Scott Q Siler, David S Pisetsky, Paul B Watkins, Brett A Howell
Gene Regulation and Systems Biology 2017:11 1177625017696074
Review | Published on 30 May 2017



Effects of High-Fat Feeding on Skeletal Muscle Gene Expression in Diabetic Goto-Kakizaki Rats
Jing Nie, Debra C DuBois, Bai Xue, William J Jusko, Richard R Almon
Gene Regulation and Systems Biology 2017:11 1177625017710009
Original Research | Published on 29 May 2017



Quantitative Study of Thermal Disturbances Due to Nonuniformly Perfused Tumors in Peripheral Regions of Women’s Breast
Akshara Makrariya, Neeru Adlakha
Cancer Informatics 2017:16 1176935117700894
Original Research | Published on 15 May 2017



Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy
Wasiu Opeyemi Oduola, Xiangfang Li, Chang Duan, Lijun Qian, Fen Wu, Edward R Dougherty
Cancer Informatics 2017:16 1176935117706888
Review | Published on 10 May 2017



Applying Multivariate Adaptive Splines to Identify Genes With Expressions Varying After Diagnosis in Microarray Experiments
Fenghai Duan, Ye Xu
Cancer Informatics 2017:16 1176935117705381
Review | Published on 04 May 2017



The Synergistic Role of Light-Feeding Phase Relations on Entraining Robust Circadian Rhythms in the Periphery
Seul-A Bae, Ioannis P Androulakis
Gene Regulation and Systems Biology 2017:11 1177625017702393
Review | Published on 20 Apr 2017



The Role of the Growth Hormone/Insulin-Like Growth Factor System in Visceral Adiposity
Moira S Lewitt
Biochemistry Insights 2017:10 1178626417703995
Review | Published on 20 Apr 2017



miR-10a and miR-204 as a Potential Prognostic Indicator in Low-Grade Gliomas
Ju Cheol Son, Hyoung Oh Jeong, Deaui Park, Sang Gyoon No, Eun Kyeong Lee, Jaewon Lee, Hae Young Chung
Cancer Informatics 2017:16 1176935117702878
Original Research | Published on 12 Apr 2017



A mixture copula Bayesian network model for multimodal genomic data
Qingyang Zhang, Xuan Shi
Cancer Informatics 2017:16 1176935117702389
Methodology | Published on 12 Apr 2017



Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification
Richard J Allen, Cynthia J Musante
Gene Regulation and Systems Biology 2017:11 1177625017690133
Review | Published on 12 Apr 2017



Bioinformatics Education in Pathology Training: Current Scope and Future Direction
Michael R Clay, Kevin E Fisher
Cancer Informatics 2017:16 1176935117703389
Review | Published on 10 Apr 2017



Time Course Expression Analysis of 1[2-cyano-3,12-dioxooleana-1,9(11)-dien-28-oyl]imidazole Induction of Cytoprotection in Human Endothelial Cells
James A Bynum, Xinyu Wang, Salomon A Stavchansky, Phillip D Bowman
Gene Regulation and Systems Biology 2017:11 1177625017701106
Original Research | Published on 07 Apr 2017



In Vitro Neurotoxicity Resulting from Exposure of Cultured Neural Cells to Several Types of Nanoparticles
Stephen F Larner, Jonathan Wang, Jared Goodman, Megan B O’Donoghue Altman, Meiguo Xin, Kevin K W Wang
Journal of Cell Death 2017:10 1179670717694523
Review | Published on 23 Mar 2017



Therapeutic Interventions of Cancers Using Intrinsically Disordered Proteins as Drug Targets: c-Myc as Model System
Deepak Kumar, Nitin Sharma, Rajanish Giri
Cancer Informatics 2017:16 1176935117699408
Review | Published on 16 Mar 2017



Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions
Shadia Zaman, Sirarat Sarntivijai, Darrell R Abernethy
Gene Regulation and Systems Biology 2017:11 1177625017696075
Review | Published on 15 Mar 2017



Nuclear Factor κB Activation Pathways During Infection
Eduardo P Amaral, Bruno B Andrade
Cell Communication Insights 2017:9 1179568917695833
Review | Published on 14 Mar 2017



Graphical Modeling Meets Systems Pharmacology
Rosario Lombardo, Corrado Priami
Gene Regulation and Systems Biology 2017:11 1177625017691937
Perspective | Published on 10 Mar 2017



Roadmap to a Comprehensive Clinical Data Warehouse for Precision Medicine Applications in Oncology
David J Foran, Wenjin Chen, Huiqi Chu, Evita Sadimin, Doreen Loh, Gregory Riedlinger, Lauri A Goodell, Shridar Ganesan, Kim Hirshfield, Lorna Rodriguez, Robert S DiPaola
Cancer Informatics 2017:16 1176935117694349
Original Research | Published on 02 Mar 2017



In Vitro Cell Death Determination for Drug Discovery: A Landscape Review of Real Issues
Benoite Méry, Jean-Baptiste Guy, Alexis Vallard, Sophie Espenel, Dominique Ardail, Claire Rodriguez-Lafrasse, Chloé Rancoule, Nicolas Magné
Journal of Cell Death 2017:10 1179670717691251
Review | Published on 24 Feb 2017



Integrative Analysis of Gene Networks and Their Application to Lung Adenocarcinoma Studies
Sangin Lee, Faming Liang, Ling Cai, Guanghua Xiao
Cancer Informatics 2017:16 1176935117690778
Original Research | Published on 23 Feb 2017



Significant Prognostic Features and Patterns of Somatic Mutations in Human Cancers
Wensheng Zhang, Andrea Edwards, Erik K Flemington, Kun Zhang
Cancer Informatics 2017:16 1176935117691267
Original Research | Published on 20 Feb 2017



Crosstalk Between Apoptosis and Autophagy: Environmental Genotoxins, Infection, and Innate Immunity
Michael G Kemp
Journal of Cell Death 2017:9 1179670716685085
Review | Published on 20 Feb 2017



Improving Gastric Cancer Outcome Prediction Using Single Time-Point Artificial Neural Network Models
Hamid Nilsaz-Dezfouli, Mohd Rizam Abu-Bakar, Jayanthi Arasan, Mohd Bakri Adam, Mohamad Amin Pourhoseingholi
Cancer Informatics 2017:16 1176935116686062
Original Research | Published on 16 Feb 2017



External Quality Assessment in the Evaluation of Laboratory Performance of Faecal Culture
Salla J Kiiskinen, Tarja Ojanen, Yvonne Björkman, Harri Laitinen, Anja Siitonen
Microbiology Insights 2017:10 1178636117691253
Original Research | Published on 16 Feb 2017



The Impact of the Unfolded Protein Response and the Hexosamine Biosynthetic Pathway on Glycosylation
Aarti A Ramanathan, Anand Mehta, Carol M Artlett
Glycobiology Insights 2017:6 1179251516688214
Review | Published on 16 Feb 2017



A Numerical Handling of the Boundary Conditions Imposed by the Skull on an Inhomogeneous Diffusion-Reaction Model of Glioblastoma Invasion Into the Brain: Clinical Validation Aspects
Georgios S Stamatakos, Stavroula G Giatili
Cancer Informatics 2017:16 1176935116684824
Original Research | Published on 03 Feb 2017



Epithelial Ovarian Cancer Diagnosis of Second-Harmonic Generation Images: A Semiautomatic Collagen Fibers Quantification Protocol
Angel A Zeitoune, Johana SJ Luna, Kynthia Sanchez Salas, Luciana Erbes, Carlos L Cesar, Liliana ALA Andrade, Hernades F Carvahlo, Fátima Bottcher-Luiz, Victor H Casco, Javier Adur
Cancer Informatics 2017:16 1176935117690162
Original Research | Published on 03 Feb 2017



Unified Least Squares Methods for the Evaluation of Diagnostic Tests With the Gold Standard
Liansheng Larry Tang, Ao Yuan, John Collins, Xuan Che, Leighton Chan
Cancer Informatics 2017:16 1176935116686063
Review | Published on 03 Feb 2017



Bayesian ABC-MCMC Classification of Liquid Chromatography–Mass Spectrometry Data
Upamanyu Banerjee and Ulisses M. Braga-Neto
Cancer Informatics 2015:Suppl. 5 175-182
Methodology | Published on 09 Jan 2017



Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis
Arunima Shilpi, Yingtao Bi, Segun Jung, Samir K. Patra and Ramana V. Davuluri
Cancer Informatics 2017:16 1-13
Original Research | Published on 09 Jan 2017



A Novel Optical Bioimaging Method for Direct Assessment of Ovarian Cancer Chemotherapy Response at Laparoscopy
Alexandros Laios, Davide Volpi, Rajeev Kumar, Zoe Traill, Borivoj Vojnovic and Ahmed A. Ahmed
Cancer Informatics 2016:15 243-245
Short Report | Published on 08 Jan 2017



Mechanism of Hepatocyte Apoptosis
Lei Cao, Xi-Bing Quan, Wen-Jiao Zeng, Xiao-Ou Yang and Ming-Jie Wang
Journal of Cell Death 2016:9 19-29
Review | Published on 29 Dec 2016



ROC Estimation from Clustered Data with an Application to Liver Cancer Data
Joungyoun Kim, Sung-Cheol Yun, Johan Lim, Moo-Song Lee, Won Son and DoHwan Park
Cancer Informatics 2016:Suppl. 4 19-26
Original Research | Published on 22 Dec 2016



Identification of Stevioside Using Tissue Culture-Derived Stevia (Stevia rebaudiana) Leaves
Md. Ziaul Karim, Daisuke Uesugi, Noriyuki Nakayama, M. Monzur Hossain, Kohji Ishihara and Hiroki Hamada
Biochemistry Insights 2015:Suppl. 2 33-37
Original Research | Published on 18 Dec 2016



Identifying Cell Type-Specific Transcription Factors by Integrating ChIP-seq and eQTL Data–Application to Monocyte Gene Regulation
Mudra Choudhury and Stephen A. Ramsey
Gene Regulation and Systems Biology 2016:10 105-110
Methodology | Published on 13 Dec 2016



Effects of Sterculia setigera Del. Stem Bark Extract on Hematological and Biochemical Parameters of Wistar Rats
Moses Z. Zaruwa, Nne. I. Ibok, Ibokabasi U. Ibok, Emmanuel C. Onyenonachi, C. Danchal, Aisha G. Ahmed, Maryam U. Ahmed and Ismaila Y. Sudi
Biochemistry Insights 2016:9 19-22
Original Research | Published on 11 Dec 2016



Quantitative Proteomic Approach for MicroRNA Target Prediction Based on 18O/16O Labeling
Xuepo Ma, Ying Zhu, Yufei Huang, Tony Tegeler, Shou-Jiang Gao and Jianqiu Zhang
Cancer Informatics 2015:Suppl. 5 163-173
Original Research | Published on 08 Dec 2016



Comparison of Three Information Sources for Smoking Information in Electronic Health Records
Liwei Wang, Xiaoyang Ruan, Ping Yang and Hongfang Liu
Cancer Informatics 2016:15 237-242
Original Research | Published on 08 Dec 2016



Analysis of Helicobacter pylori Prevalence in Chittagong, Bangladesh, Based on PCR and CLO Test
Abdul Musaweer Habib, Md. Jibran Alam, Bashudev Rudra, Md. Abdul Quader and Mohammad Al-Forkan
Microbiology Insights 2016:9 47-50
Original Research | Published on 17 Nov 2016



Evaluating the Effect of Oxygen Concentrations on Antibiotic Sensitivity, Growth, and Biofilm Formation of Human Pathogens
Shilpi Gupta, Nozrin Laskar and Daniel E. Kadouri
Microbiology Insights 2016:9 37-46
Original Research | Published on 16 Nov 2016




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