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Proteomics

Range of open access peer reviewed Proteomics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 89 for Proteomics

Bayesian ABC-MCMC Classification of Liquid Chromatography–Mass Spectrometry Data
Upamanyu Banerjee and Ulisses M. Braga-Neto
Cancer Informatics 2015:Suppl. 5 175-182
Methodology | Published on 09 Jan 2017



Quantitative Proteomic Approach for MicroRNA Target Prediction Based on 18O/16O Labeling
Xuepo Ma, Ying Zhu, Yufei Huang, Tony Tegeler, Shou-Jiang Gao and Jianqiu Zhang
Cancer Informatics 2015:Suppl. 5 163-173
Original Research | Published on 08 Dec 2016



Support Vector Machines Trained with Evolutionary Algorithms Employing Kernel Adatron for Large Scale Classification of Protein Structures
Nancy Arana-Daniel, Alberto A. Gallegos, Carlos López-Franco, Alma Y. Alanís, Jacob Morales and Adriana López-Franco
Evolutionary Bioinformatics 2016:12 285-302
Original Research | Published on 04 Dec 2016



Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins
Shaik Naseer Pasha, Iyer Meenakshi and Ramanathan Sowdhamini
Evolutionary Bioinformatics 2016:12 201-211
Original Research | Published on 29 Aug 2016



PIMADb: A Database of Protein–Protein Interactions in Huge Macromolecular Assemblies
Oommen K. Mathew and Ramanathan Sowdhamini
Bioinformatics and Biology Insights 2016:10 105-109
Original Research | Published on 19 Jul 2016



PDBparam: Online Resource for Computing Structural Parameters of Proteins
R. Nagarajan, A. Archana, A. Mary Thangakani, S. Jemimah, D. Velmurugan, and M. Michael Gromiha
Bioinformatics and Biology Insights 2016:10 73-80
Software or Database Review | Published on 14 Jun 2016



Coevolution of RAC Small GTPases and their Regulators GEF Proteins
Alejandro Jiménez-Sánchez
Evolutionary Bioinformatics 2016:12 121-131
Original Research | Published on 17 May 2016



Phylogenetic and Structural Analysis of Polyketide Synthases in Aspergilli
Preetida J. Bhetariya, Madhvi Prajapati, Asani Bhaduri, Rahul Shubhra Mandal, Anupam Varma, Taruna Madan, Yogendra Singh and P. Usha Sarma
Evolutionary Bioinformatics 2016:12 109-119
Original Research | Published on 10 May 2016



Stabilization and Degradation Mechanisms of Cytoplasmic Ataxin-1
Mayumi F. Kohiyama and Sarita Lagalwar
Journal of Experimental Neuroscience 2015:Suppl. 2 123-129
Review | Published on 05 May 2016



The Present and Future of Biomarkers in Prostate Cancer: Proteomics, Genomics, and Immunology Advancements
Pierre-Olivier Gaudreau, John Stagg, Denis Soulières and Fred Saad
Biomarkers in Cancer 2016:Suppl. 2 15-33
Review | Published on 05 May 2016



A New Approach for Identification of Cancer-related Pathways using Protein Networks and Genomic Data
André Fonseca, Marco D. Gubitoso, Marcelo S. Reis, Sandro J. de Souza, and Junior Barrera
Cancer Informatics 2015:Suppl. 5 139-149
Original Research | Published on 02 May 2016



Practical Approaches for Mining Frequent Patterns in Molecular Datasets
Stefan Naulaerts, Sandy Moens, Kristof Engelen, Wim Vanden Berghe, Bart Goethals, Kris Laukens and Pieter Meysman
Bioinformatics and Biology Insights 2016:10 37-47
Review | Published on 02 May 2016



Fluorescent Cell Imaging in Regenerative Medicine
Etai Sapoznik, Guoguang Niu, Yu Zhou, Sean V. Murphy and Shay Soker
Biomedical Engineering and Computational Biology 2016:Suppl. 1 29-33
Short Review | Published on 02 May 2016



Proteomic Changes in the Plasma of Broiler Chickens with Femoral Head Necrosis
Balamurugan Packialakshmi, Rohana Liyanage, Jackson O. Lay, Jr., Ronald Okimoto and Narayan C. Rath
Biomarker Insights 2016:11 55-62
Original Research | Published on 27 Apr 2016



Proteomic Changes in Chicken Plasma Induced by Salmonella typhimurium Lipopolysaccharides
Balamurugan Packialakshmi, Rohana Liyanage, Jackson O. Lay Jr, Sarbjeet K. Makkar and Narayan C. Rath
Proteomics Insights 2016:7 1-9
Original Research | Published on 31 Mar 2016



Comparative Proteomic Analysis of Advanced Ovarian Cancer Tissue to Identify Potential Biomarkers of Responders and Nonresponders to First-Line Chemotherapy of Carboplatin and Paclitaxel
Urmila Sehrawat, Ruchika Pokhriyal, Ashish Kumar Gupta, Roopa Hariprasad, Mohd Imran Khan, Divya Gupta, Jasmine Naru, Sundararajan Baskar Singh, Ashok Kumar Mohanty, Perumal Vanamail, Lalit Kumar, Sunesh Kumar and Gururao Hariprasad
Biomarkers in Cancer 2016:8 43-56
Original Research | Published on 16 Mar 2016



Role of Flippases in Protein Glycosylation in the Endoplasmic Reticulum
Jeffrey S. Rush
Lipid Insights 2015:Suppl. 1 45-53
Review | Published on 21 Feb 2016



Simulation of the Protein-Shedding Kinetics of a Fully Vascularized Tumor
Hermann B. Frieboes, Louis T. Curtis, Min Wu, Kian Kani and Parag Mallick
Cancer Informatics 2015:14 163-175
Original Research | Published on 20 Dec 2015



Homology-Based Prediction of Potential Protein–Protein Interactions between Human Erythrocytes and Plasmodium falciparum
Gayatri Ramakrishnan, Narayanaswamy Srinivasan, Ponnan Padmapriya and Vasant Natarajan
Bioinformatics and Biology Insights 2015:9 195-206
Original Research | Published on 20 Dec 2015



OSBP-Related Protein Family in Lipid Transport Over Membrane Contact Sites
Vesa M. Olkkonen
Lipid Insights 2015:Suppl. 1 1-9
Review | Published on 12 Nov 2015



Soft Computing Methods for Disulfide Connectivity Prediction
Alfonso E. Márquez-Chamorro and Jesús S. Aguilar-Ruiz
Evolutionary Bioinformatics 2015:11 223-229
Review | Published on 20 Oct 2015



Applying Side-chain Flexibility in Motifs for Protein Docking
Hui Liu, Feng Lin, Jian-Li Yang, Hong-Rui Wang and Xiu-Ling Liu
Genomics Insights 2015:8 1-10
Original Research | Published on 15 Oct 2015



PPCheck: A Webserver for the Quantitative Analysis of Protein–Protein Interfaces and Prediction of Residue Hotspots
Anshul Sukhwal and Ramanathan Sowdhamini
Bioinformatics and Biology Insights 2015:9 141-151
Original Research | Published on 21 Sep 2015



Aberrant Expression of Cyclin D1 in Cancer
Kazushi Inoue and Elizabeth A. Fry
Signal Transduction Insights 2015:4 1-13
Review | Published on 20 Sep 2015



Expression Divergence of Duplicate Genes in the Protein Kinase Superfamily in Pacific Oyster
Dahai Gao, Dennis C. Ko, Xinmin Tian, Guang Yang and Liuyang Wang
Evolutionary Bioinformatics 2015:Suppl. 1 57-65
Review | Published on 13 Sep 2015



tRNA-Derived Short Non-coding RNA as Interacting Partners of Argonaute Proteins
Megumi Shigematsu and Yohei Kirino
Gene Regulation and Systems Biology 2015:9 27-33
Review | Published on 10 Sep 2015



Genomic, Proteomic, and Metabolomic Data Integration Strategies
Kwanjeera Wanichthanarak, Johannes F. Fahrmann and Dmitry Grapov
Biomarker Insights 2015:Suppl. 4 1-6
Review | Published on 07 Sep 2015 | Editor in Chief endorsed



A Serum Analysis Before and After Antidepressant Treatment in Major Depression: A Pilot Study
Murielle Girard, Karine Vuilliers-Devillers, Emilie Pinault, Barbara Bessette, Brigitte Plansont and Dominique Malauzat
Clinical Medicine Insights: Psychiatry 2015:6 1-12
Original Research | Published on 15 Jun 2015



A Hypothesis-Directed Approach to the Targeted Development of a Multiplexed Proteomic Biomarker Assay for Cancer
Emily M. Mackay, Jennifer Koppel, Pooja Das, Joanna Woo, David C. Schriemer and Oliver F. Bathe
Cancer Informatics 2015:14 65-70
Technical Advance | Published on 17 May 2015



Roles of Solvent Accessibility and Gene Expression in Modeling Protein Sequence Evolution
Kuangyu Wang, Shuhui Yu, Xiang Ji, Clemens Lakner, Alexander Griffing and Jeffrey L. Thorne
Evolutionary Bioinformatics 2015:11 85-96
Original Research | Published on 29 Apr 2015



Network Analysis of Circular Permutations in Multidomain Proteins Reveals Functional Linkages for Uncharacterized Proteins
Donald Adjeroh, Yue Jiang, Bing-Hua Jiang and Jie Lin
Cancer Informatics 2014:Suppl. 5 109-124
Methodology | Published on 19 Feb 2015



Pathway-based Biomarkers for Breast Cancer in Proteomics
Fan Zhang, Youping Deng, Mu Wang, Li Cui and Renee Drabier
Cancer Informatics 2014:Suppl. 5 101-108
Review | Published on 09 Feb 2015



Prednisolone-Induced Predisposition to Femoral Head Separation and the Accompanying Plasma Protein Changes in Chickens
B Packialakshmi, R Liyanage, JO Lay, Jr, R Okimoto and NC Rath
Biomarker Insights 2015:10 1-8
Original Research | Published on 14 Jan 2015



Role of Galectin-3 in Cancer Metastasis
Joana T. de Oliveira, Cláudia Ribeiro and Fátima Gärtner
Glycobiology Insights 2015:5 1-13
Review | Published on 13 Jan 2015



Computational Analysis Reveals a Successive Adaptation of Multiple Inositol Polyphosphate Phosphatase 1 in Higher Organisms Through Evolution
Surya P. Kilaparty, Awantika Singh, William H. Baltosser and Nawab Ali
Evolutionary Bioinformatics 2014:10 239-250
Original Research | Published on 22 Dec 2014



A Hypothetical Protein of Alteromonas macleodii AltDE1 (amad1_06475) Predicted to be a Cold-Shock Protein with RNA Chaperone Activity
Arafat Rahman Oany, Shah Adil Ishtiyaq Ahmad, KM Kaderi Kibria, Mohammad Uzzal Hossain and Tahmina Pervin Jyoti
Gene Regulation and Systems Biology 2014:8 141-147
Original Research | Published on 18 Dec 2014



Bayesian Hierarchical Models for Protein Networks in Single-Cell Mass Cytometry
Riten Mitra, Peter Müller, Peng Qiu and Yuan Ji
Cancer Informatics 2014:Suppl. 4 79-89
Review | Published on 10 Dec 2014



Genome-wide Analysis of Mycoplasma hominis for the Identification of Putative Therapeutic Targets
Md. Masud Parvege, Monzilur Rahman and Mohammad Shahnoor Hossain
Drug Target Insights 2014:8 51-62
Original Research | Published on 09 Dec 2014



A Comprehensive Comparison of Normalization Methods for Loading Control and Variance Stabilization of Reverse-Phase Protein Array Data
Wenbin Liu, Zhenlin Ju, Yiling Lu, Gordon B. Mills and Rehan Akbani
Cancer Informatics 2014:13 109-117
Original Research | Published on 16 Oct 2014



CSNK1A1 and Gli2 as Novel Targets Identified Through an Integrative Analysis of Gene Expression Data, Protein-Protein Interaction and Pathways Networks in Glioblastoma Tumors: Can These Two Be Antagonistic Proteins?
Seema Mishra
Cancer Informatics 2014:13 93-108
Original Research | Published on 13 Oct 2014



Modeling Signal Transduction from Protein Phosphorylation to Gene Expression
Chunhui Cai, Lujia Chen, Xia Jiang and Xinghua Lu
Cancer Informatics 2014:Suppl. 1 59-67
Review | Published on 13 Oct 2014



Optogenetic Control of Apoptosis in Targeted Tissues of Xenopus laevis Embryos
Kyle Jewhurst, Michael Levin and Kelly A. McLaughlin
Journal of Cell Death 2014:7 25-31
Methodology | Published on 13 Oct 2014



Distinct Mitral Valve Proteomic Profiles in Rheumatic Heart Disease and Myxomatous Degeneration
Carlo de Oliveira Martins, Keity Souza Santos, Frederico Moraes Ferreira, Priscila Camillo Teixeira, Pablo Maria Alberto Pomerantzeff, Carlos M. A. Brandão, Roney Orismar Sampaio, Guilherme S. Spina, Jorge Kalil, Luiza Guilherme, and Edecio Cunha-Neto
Clinical Medicine Insights: Cardiology 2014:8 79-86
Original Research | Published on 27 Aug 2014



Ribosomopathies: Mechanisms of Disease
Hani Nakhoul, Jiangwei Ke, Xiang Zhou, Wenjuan Liao, Shelya X. Zeng and Hua Lu
Clinical Medicine Insights: Blood Disorders 2014:7 7-16
Review | Published on 14 Aug 2014



Innate Immunity Interactome Dynamics
Asmaa Elzawahry, Ashwini Patil, Yutaro Kumagai, Yutaka Suzuki and Kenta Nakai
Gene Regulation and Systems Biology 2014:8 1-15
Original Research | Published on 06 Jan 2014



Proteomic Analysis of Soybean [Glycine max (L.) Merrill] Roots Inoculated with Bradyrhizobium japonicum Strain CPAC 15
Adalgisa R. Torres, Elisete P. Rodrigues, Jesiane S.S. Batista, Douglas F. Gomes and Mariangela Hungria
Proteomics Insights 2013:6 7-11
Original Research | Published on 19 Nov 2013



Protein Expression Dynamics During Postnatal Mouse Brain Development
Annelies Laeremans, Babs Van de Plas, Stefan Clerens, Gert Van den Bergh, Lutgarde Arckens and Tjing-Tjing Hu
Journal of Experimental Neuroscience 2013:7 61-74
Original Research | Published on 06 Oct 2013



The Kynurenine Pathway in Stem Cell Biology
Simon P. Jones, Gilles J. Guillemin and Bruce J. Brew
International Journal of Tryptophan Research 2013:6 57-66
Review | Published on 15 Sep 2013



Identification of Signaling Protein Complexes by Parallel Affinity Precipitation Coupled with Mass Spectrometry
Heng Lu, Qishan Lin and Jihe Zhao
Cell Communication Insights 2013:5 1-7
Methodology | Published on 11 Sep 2013



Identification of Potential Prognostic Markers for Knee Osteoarthritis by Serum Proteomic Analysis
Yoshihiko Takinami, Shinya Yoshimatsu, Takaoki Uchiumi, Tomoko Toyosaki-Maeda, Atsushi Morita, Takeshi Ishihara, Shoji Yamane, Isao Fukuda, Hiroyuki Okamoto, Yoshito Numata and Naoshi Fukui
Biomarker Insights 2013:8 85-95
Original Research | Published on 29 Jul 2013




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