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Bioinformatics

Range of open access peer reviewed Bioinformatics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 1708 for Bioinformatics

Development and Retrospective Clinical Assessment of a Patient-Specific Closed-Form Integro-Differential Equation Model of Plasma Dilution
Glen Atlas, John K-J Li, Shawn Amin, Robert G Hahn
Biomedical Engineering and Computational Biology 2017:8 1179597217730305
Original Research | Published on 26 Oct 2017



Polymorphism of 11 Y Chromosome Short Tandem Repeat Markers among Malaysian Aborigines
Sofia Sakina Mohd Yussup, Marlia Marzukhi, Badrul Munir Md-Zain, Kamaruddin Mamat, Farida Zuraina Mohd Yusof
Evolutionary Bioinformatics 2017:13 1176934317735318
Original Research | Published on 17 Oct 2017



Insights Into Upland Cotton ( L.) Genetic Recombination Based on 3 High-Density Single-Nucleotide Polymorphism and a Consensus Map Developed Independently With Common Parents
Mauricio Ulloa, Amanda M Hulse-Kemp, Luis M De Santiago, David M Stelly, John J Burke
Genomics Insights 2017:10 1178631017735104
Original Research | Published on 17 Oct 2017



MGUPGMA: A Fast UPGMA Algorithm With Multiple Graphics Processing Units Using NCCL
Guan-Jie Hua, Che-Lun Hung, Chun-Yuan Lin, Fu-Che Wu, Yu-Wei Chan, Chuan Yi Tang
Evolutionary Bioinformatics 2017:13 1176934317734220
Review | Published on 04 Oct 2017



Finding the Sources of Missing Heritability within Rare Variants Through Simulation
Baishali Bandyopadhyay, Veda Chanda, Yupeng Wang
Bioinformatics and Biology Insights 2017:11 1177932217735096
Short Report | Published on 04 Oct 2017



Exon Mapping in Long Noncoding RNAs Using Digital Filters
Tina P George, Tessamma Thomas
Genomics Insights 2017:10 1178631017732029
Original Research | Published on 29 Sep 2017



Diffusion in Tube Dialyzer
Yohannes Nigatie
Biomedical Engineering and Computational Biology 2017:8 1179597217732006
Original Research | Published on 29 Sep 2017



A Metagenomic Analysis of Bacterial Microbiota in the Digestive Tract of Triatomines
Nicolas Carels, Marcial Gumiel, Fabio Faria da Mota, Carlos José de Carvalho Moreira, Patricia Azambuja
Bioinformatics and Biology Insights 2017:11 1177932217733422
Original Research | Published on 27 Sep 2017



Epigenetic Regulation of Gene Expression Induced by Butyrate in Colorectal Cancer: Involvement of MicroRNA
Karen S Bishop, Huawen Xu, Gareth Marlow
Genetics & Epigenetics 2017:9 1179237X17729900
Review | Published on 25 Sep 2017



Changes in Alternative Splicing as Pharmacodynamic Markers for Sudemycin D6
Morgan Thurman, Jacob van Doorn, Barbara Danzer, Thomas R Webb, Stefan Stamm
Biomarker Insights 2017:12 1177271917730557
Short Report | Published on 12 Sep 2017



Bioinformatics Study of m.9053G>A Mutation at the Gene in Relation to Type 2 Diabetes Mellitus and Cataract Diseases
*Iman Permana Maksum, Sandy Risfi Saputra, Nenden Indrayati, *Muhammad Yusuf, Toto Subroto
Bioinformatics and Biology Insights 2017:11 1177932217728515
Research Proposal | Published on 12 Sep 2017



Gene-Set Reduction for Analysis of Major and Minor Gleason Scores Based on Differential Gene-Set Expressions and Biological Pathways in Prostate Cancer
Irina Dinu, Surya Poudel, Saumyadipta Pyne
Cancer Informatics 2017:16 1176935117730016
Original Research | Published on 11 Sep 2017



A Modified Mean Gray Wolf Optimization Approach for Benchmark and Biomedical Problems
Narinder Singh, SB Singh
Evolutionary Bioinformatics 2017:13 1176934317729413
Original Research | Published on 11 Sep 2017



Inhaled Steroids and Active Smoking Drive Chronic Obstructive Pulmonary Disease Symptoms and Biomarkers to a Greater Degree Than Airflow Limitation
Philip E Silkoff, Dave Singh, J Mark FitzGerald, Andreas Eich, Andrea Ludwig-Sengpiel, Geoffrey C Chupp, Vibeke Backer, Celeste Porsbjerg, Pierre-Olivier Girodet, Mark T Dransfield, Frederic Baribaud, Vedrana S Susulic, Matthew J Loza
Biomarker Insights 2017:12 1177271917730306
Original Research | Published on 07 Sep 2017



Hierarchical Association Coefficient Algorithm: New Method for Genome-Wide Association Study
Bongsong Kim
Evolutionary Bioinformatics 2017:13 1176934317713004
Original Research | Published on 31 Aug 2017



xSyn: A Software Tool for Identifying Sophisticated 3-Way Interactions From Cancer Expression Data
Baishali Bandyopadhyay, Veda Chanda, Yupeng Wang
Cancer Informatics 2017:16 1176935117728516
Methodology | Published on 28 Aug 2017



Chondroitin Sulfate Inhibits Monocyte Chemoattractant Protein-1 Release From 3T3-L1 Adipocytes: A New Treatment Opportunity for Obesity-Related Inflammation?
Thomas V Stabler, Eulàlia Montell, Josep Vergés, Janet L Huebner, Virginia Byers Kraus
Biomarker Insights 2017:12 1177271917726964
Short Report | Published on 24 Aug 2017



Optimized Next-Generation Sequencing Genotype-Haplotype Calling for Genome Variability Analysis
Javier Navarro, Bruno Nevado, Porfidio Hernández, Gonzalo Vera, Sebastián E Ramos-Onsins
Evolutionary Bioinformatics 2017:13 1176934317723884
Original Research | Published on 24 Aug 2017



Complete Mitochondrial Genomes of the Cherskii’s Sculpin and Siberian Taimen Reveal GenBank Entry Errors: Incorrect Species Identification and Recombinant Mitochondrial Genome
Evgeniy S Balakirev, Pavel A Saveliev, Francisco J Ayala
Evolutionary Bioinformatics 2017:13 1176934317726783
Short Report | Published on 24 Aug 2017



Adaptive Multiview Nonnegative Matrix Factorization Algorithm for Integration of Multimodal Biomedical Data
Bisakha Ray, Wenke Liu, David Fenyö
Cancer Informatics 2017:16 1176935117725727
Methodology | Published on 18 Aug 2017



Popmarker: Identifying Phylogenetic Markers at the Population Level
Huei-Mien Ke, Chun-Ping Yu, Yu-Ching Liu, Isheng J Tsai
Evolutionary Bioinformatics 2017:13 1176934317724404
Review | Published on 16 Aug 2017



Embedded-Based Graphics Processing Unit Cluster Platform for Multiple Sequence Alignments
Jyh-Da Wei, Hui-Jun Cheng, Chun-Yuan Lin, Jin Ye, Kuan-Yu Yeh
Evolutionary Bioinformatics 2017:13 1176934317724764
Review | Published on 08 Aug 2017



Multiple Testing in the Context of Gene Discovery in Sickle Cell Disease Using Genome-Wide Association Studies
Kevin H.M. Kuo
Genomics Insights 2017:10 1178631017721178
Review | Published on 01 Aug 2017



Consistency and Variability of DNA Methylation in Women During Puberty, Young Adulthood, and Pregnancy
Su Chen, Nandini Mukherjee, Vimala Devi Janjanam, S Hasan Arshad, Ramesh J Kurukulaaratchy, John W Holloway, Hongmei Zhang, Wilfried Karmaus
Genetics & Epigenetics 2017:9 1179237X17721540
Original Research | Published on 28 Jul 2017



Immuno-Oncology Integrative Networks: Elucidating the Influences of Osteosarcoma Phenotypes
Ankush Sharma, Enrico Capobianco
Cancer Informatics 2017:16 1176935117721691
Original Research | Published on 26 Jul 2017



Linear-In-Flux-Expressions Methodology: Toward a Robust Mathematical Framework for Quantitative Systems Pharmacology Simulators
Sean T McQuade, Ruth E Abrams, Jeffrey S Barrett, Benedetto Piccoli, Karim Azer
Gene Regulation and Systems Biology 2017:11 1177625017711414
Review | Published on 26 Jul 2017



Reverse Nearest Neighbor Search on a Protein-Protein Interaction Network to Infer Protein-Disease Associations
Apichat Suratanee, Kitiporn Plaimas
Bioinformatics and Biology Insights 2017:11 1177932217720405
Original Research | Published on 13 Jul 2017



Prediction With Dimension Reduction of Multiple Molecular Data Sources for Patient Survival
Adam Kaplan, Eric F Lock
Cancer Informatics 2017:16 1176935117718517
Methodology | Published on 11 Jul 2017



Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genus , family
Aneta Gubala, Susan Walsh, Jane McAllister, Richard Weir, Steven Davis, Lorna Melville, Ian Mitchell, Dieter Bulach, Penny Gauci, Alex Skvortsov, David Boyle
Evolutionary Bioinformatics 2017:13 1176934317713484
Review | Published on 11 Jul 2017



The Impact of Collisions on the Ability to Detect Rare Mutant Alleles Using Barcode-Type Next-Generation Sequencing Techniques
Jenna VanLiere Canzoniero, Karen Cravero, Ben Ho Park
Cancer Informatics 2017:16 1176935117719236
Original Research | Published on 10 Jul 2017



Insights Into Signaling in Cell-Based Therapy for Heart Disease
Angela C Rieger, Bryon A Tompkins, Monisha Banerjee, Makoto Natsumeda, Victoria Florea, Ivonne H Schulman
Signal Transduction Insights 2017:6 1178643417717688
Review | Published on 10 Jul 2017



An Assessment of Database-Validated microRNA Target Genes in Normal Colonic Mucosa: Implications for Pathway Analysis
Martha L Slattery, Jennifer S Herrick, John R Stevens, Roger K Wolff, Lila E Mullany
Cancer Informatics 2017:16 1176935117716405
Original Research | Published on 23 Jun 2017



Prognostic Impact of Urokinase Plasminogen Activator Receptor Expression in Pancreatic Cancer: Malignant Versus Stromal Cells
Susanna WL de Geus, Victor M Baart, Martin C Boonstra, Peter JK Kuppen, Hendrica AJM Prevoo, Andrew P Mazar, Bert A Bonsing, Hans Morreau, Cornelis JH van de Velde, Alexander L Vahrmeijer, Cornelis FM Sier
Biomarker Insights 2017:12 1177271917715443
Review | Published on 22 Jun 2017



A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation
Lisa M Gandy, Jordan Gumm, Amanda L Blackford, Elana J Fertig, Luis A Diaz
Cancer Informatics 2017:16 1176935117711940
Original Research | Published on 22 Jun 2017



A Quantitative Systems Pharmacology Platform to Investigate the Impact of Alirocumab and Cholesterol-Lowering Therapies on Lipid Profiles and Plaque Characteristics
Jeffrey E Ming, Ruth E Abrams, Derek W Bartlett, Mengdi Tao, Tu Nguyen, Howard Surks, Katherine Kudrycki, Ananth Kadambi, Christina M Friedrich, Nassim Djebli, Britta Goebel, Alex Koszycki, Meera Varshnaya, Joseph Elassal, Poulabi Banerjee, William J Sasiela, Michael J Reed, Jeffrey S Barrett, Karim Azer
Gene Regulation and Systems Biology 2017:11 1177625017710941
Original Research | Published on 22 Jun 2017



Making Meaningful Clinical Use of Biomarkers
Matthew J Selleck, Maheswari Senthil, Nathan R Wall
Biomarker Insights 2017:12 1177271917715236
Review | Published on 19 Jun 2017



RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes
Jiye Kim, Kyong Mi Jun, Joung Sug Kim, Songhwa Chae, Yoon-Mok Pahk, Tae-Ho Lee, Soo-In Sohn, Soo In Lee, Myung-Ho Lim, Chang-Kug Kim, Yoonkang Hur, Baek Hie Nahm, Yeon-Ki Kim
Evolutionary Bioinformatics 2017:13 1176934317715421
Original Research | Published on 19 Jun 2017



Genome-Wide Identification and Comparative Analysis of Albumin Family in Vertebrates
Shugang Li, Yiping Cao, Fang Geng
Evolutionary Bioinformatics 2017:13 1176934317716089
Original Research | Published on 19 Jun 2017



Conservation of Repeats at the Mammalian KCNQ1OT1-CDKN1C Region Suggests a Role in Genomic Imprinting
Marcos De Donato, Tanveer Hussain, Hectorina Rodulfo, Sunday O Peters, Ikhide G Imumorin, Bolaji N Thomas
Evolutionary Bioinformatics 2017:13 1176934317715238
Original Research | Published on 16 Jun 2017



CellTrans: An R Package to Quantify Stochastic Cell State Transitions
Thomas Buder, Andreas Deutsch, Michael Seifert, Anja Voss-Böhme
Bioinformatics and Biology Insights 2017:11 1177932217712241
Original Research | Published on 16 Jun 2017



The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
Eunji Kim, Ivan Ivanov, Jianping Hua, Johanna W Lampe, Meredith AJ Hullar, Robert S Chapkin, Edward R Dougherty
Cancer Informatics 2017:16 1176935117710530
Methodology | Published on 12 Jun 2017



A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major
Larissa Catharina, Carlyle Ribeiro Lima, Alexander Franca, Ana Carolina Ramos Guimarães, Marcelo Alves-Ferreira, Pierre Tuffery, Philippe Derreumaux, Nicolas Carels
Bioinformatics and Biology Insights 2017:11 1177932217712471
Methodology | Published on 12 Jun 2017



Using Transfer Learning for Improved Mortality Prediction in a Data-Scarce Hospital Setting
Thomas Desautels, Jacob Calvert, Jana Hoffman, Qingqing Mao, Melissa Jay, Grant Fletcher, Chris Barton, Uli Chettipally, Yaniv Kerem, Ritankar Das
Biomedical Informatics Insights 2017:9 1178222617712994
Original Research | Published on 12 Jun 2017



Optical Coherence Tomography Technology and Quality Improvement Methods for Optical Coherence Tomography Images of Skin: A Short Review
Saba Adabi, Zahra Turani, Emad Fatemizadeh, Anne Clayton, Mohammadreza Nasiriavanaki
Biomedical Engineering and Computational Biology 2017:8 1179597217713475
Short Review | Published on 12 Jun 2017



Tumor RAS Gene Expression Levels Are Influenced by the Mutational Status of RAS Genes and Both Upstream and Downstream RAS Pathway Genes
Robert M Stephens, Ming Yi, Bailey Kessing, Dwight V Nissley, Frank McCormick
Cancer Informatics 2017:16 1176935117711944
Original Research | Published on 08 Jun 2017



A Transcriptional Regulatory Role for the Membrane Type-1 Matrix Metalloproteinase in Carcinogen-Induced Inflammasome Gene Expression
Samuel Sheehy, Borhane Annabi
Gene Regulation and Systems Biology 2017:11 1177625017713996
Original Research | Published on 08 Jun 2017



Overexpression and Knockdown of Hypoxia-Inducible Factor 1 Disrupt the Expression of Steroidogenic Enzyme Genes and Early Embryonic Development in Zebrafish
Tianfeng Tan, Richard Man Kit Yu, Rudolf Shiu Sun Wu, Richard Yuen Chong Kong
Gene Regulation and Systems Biology 2017:11 1177625017713193
Original Research | Published on 08 Jun 2017



Leveraging Food and Drug Administration Adverse Event Reports for the Automated Monitoring of Electronic Health Records in a Pediatric Hospital
Huaxiu Tang, Imre Solti, Eric Kirkendall, Haijun Zhai, Todd Lingren, Jaroslaw Meller, Yizhao Ni
Biomedical Informatics Insights 2017:9 1178222617713018
Original Research | Published on 08 Jun 2017



Influence of Circulating Endothelin-1 and Asymmetric Dimethylarginine on Whole Brain Circulation Time in Multiple Sclerosis
Lucia Monti, Lucia Morbidelli, Lorenzo Bazzani, Alessandro Rossi
Biomarker Insights 2017:12 1177271917712514
Original Research | Published on 06 Jun 2017



Data-Independent Acquisition and Parallel Reaction Monitoring Mass Spectrometry Identification of Serum Biomarkers for Ovarian Cancer
Navin Rauniyar, Gang Peng, TuKiet T Lam, Hongyu Zhao, Gil Mor, Kenneth R Williams
Biomarker Insights 2017:12 1177271917710948
Original Research | Published on 05 Jun 2017




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