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Bioinformatics

Range of open access peer reviewed Bioinformatics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 962 for Bioinformatics

Commensal Viruses of Mosquitoes: Host Restriction, Transmission, and Interaction with Arboviral Pathogens
Roy A. Hall, Helle Bielefeldt-Ohmann, Breeanna J. McLean, Caitlin A. O'Brien, Agathe M.G. Colmant, Thisun B.H. Piyasena, Jessica J. Harrison, Natalee D. Newton, Ross T. Barnard, Natalie A. Prow, Joshua M. Deerain, Marcus G.K.Y. Mah, and Jody Hobson-Peters
Evolutionary Bioinformatics 2016:Suppl. 2 35-44
Review | Published on 10 Jan 2017



Bayesian ABC-MCMC Classification of Liquid Chromatography–Mass Spectrometry Data
Upamanyu Banerjee and Ulisses M. Braga-Neto
Cancer Informatics 2015:Suppl. 5 175-182
Methodology | Published on 09 Jan 2017



Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis
Arunima Shilpi, Yingtao Bi, Segun Jung, Samir K. Patra and Ramana V. Davuluri
Cancer Informatics 2017:16 1-13
Original Research | Published on 09 Jan 2017



ROC Estimation from Clustered Data with an Application to Liver Cancer Data
Joungyoun Kim, Sung-Cheol Yun, Johan Lim, Moo-Song Lee, Won Son and DoHwan Park
Cancer Informatics 2016:Suppl. 4 19-26
Original Research | Published on 22 Dec 2016



Direct and Electronic Health Record Access to the Clinical Decision Support for Immunizations in the Minnesota Immunization Information System
Sripriya Rajamani, Aaron Bieringer, Stephanie Wallerius, Daniel Jensen, Tamara Winden and Miriam Halstead Muscoplat
Biomedical Informatics Insights 2016:Suppl. 2 23-29
Rapid Communication | Published on 22 Dec 2016



Molecular Modeling and Phylogeny of the Krüppel-like Factor 4 (cKLF4) Protein from the Arabian Camel, Camelus dromedarius
Abdullah O. Alawad, Sultan N. Alharbi, Othman A. Alhazzaa, Faisal S. Alagrafi, Mohammad N. Alkhrayef, Ziyad A. Alhamdan, Abdullah D. Alenazi, Mohamed Hammad, Sami A. Alyahya, Hasan A. AlJohi and Ibrahim O. Alanazi
Bioinformatics and Biology Insights 2016:10 291-300
Original Research | Published on 21 Dec 2016



Prefiltering Model for Homology Detection Algorithms on GPU
Germán Retamosa, Luis de Pedro, Ivan González and Javier Tamames
Evolutionary Bioinformatics 2016:12 313-322
Original Research | Published on 18 Dec 2016



Current Bacterial Gene Encoding Capsule Biosynthesis Protein CapI Contains Nucleotides Derived from Exonization
Yong Wang, Xia-Fang Tao, Zhi-Xi Su, A-Ke Liu, Tian-Lei Liu, Ling Sun, Qin Yao, Ke-Ping Chen and Xun Gu
Evolutionary Bioinformatics 2016:12 303-312
Short Report | Published on 12 Dec 2016



Quantitative Proteomic Approach for MicroRNA Target Prediction Based on 18O/16O Labeling
Xuepo Ma, Ying Zhu, Yufei Huang, Tony Tegeler, Shou-Jiang Gao and Jianqiu Zhang
Cancer Informatics 2015:Suppl. 5 163-173
Original Research | Published on 08 Dec 2016



Comparison of Three Information Sources for Smoking Information in Electronic Health Records
Liwei Wang, Xiaoyang Ruan, Ping Yang and Hongfang Liu
Cancer Informatics 2016:15 237-242
Original Research | Published on 08 Dec 2016



Integrating Epigenomics into the Understanding of Biomedical Insight
Yixing Han and Ximiao He
Bioinformatics and Biology Insights 2016:10 267-289
Review | Published on 04 Dec 2016



Tennessee’s 3-Star Report: Using Available Data Systems to Reduce Missed Opportunities to Vaccinate Preteens
Kelly L. Moore, Melissa K. Fankhauser and Pamela C. Hull
Biomedical Informatics Insights 2016:Suppl. 2 15-21
Technical Advance | Published on 04 Dec 2016



Analysis of Parallel Algorithms on SMP Node and Cluster of Workstations Using Parallel Programming Models with New Tile-based Method for Large Biological Datasets
D. D. Shrimankar and S. R. Sathe
Bioinformatics and Biology Insights 2016:10 255-265
Methodology | Published on 30 Nov 2016



Clustering Algorithms: Their Application to Gene Expression Data
Jelili Oyelade, Itunuoluwa Isewon, Funke Oladipupo, Olufemi Aromolaran, Efosa Uwoghiren, Faridah Ameh, Moses Achas and Ezekiel Adebiyi
Bioinformatics and Biology Insights 2016:10 237-253
Review | Published on 30 Nov 2016



EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers
Alvaro Chiner-Oms and Fernando González-Candelas
Evolutionary Bioinformatics 2016:12 277-284
Original Research | Published on 28 Nov 2016



A Comparative In Silico Study of the Antioxidant Defense Gene Repertoire of Distinct Lifestyle Trypanosomatid Species
Ingrid Thaís Beltrame-Botelho, Carlos Talavera-López, Björn Andersson, Edmundo Carlos Grisard and Patricia Hermes Stoco
Evolutionary Bioinformatics 2016:12 263-275
Original Research | Published on 07 Nov 2016



A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits
Young-Joo Seol, So Youn Won, Younhee Shin, Jong-Yeol Lee, Jong-Sik Chun, Yong-Kab Kim and Chang-Kug Kim
Evolutionary Bioinformatics 2016:12 253-262
Original Research | Published on 02 Nov 2016



Immunoinformatics Approach in Designing Epitope-based Vaccine Against Meningitis-inducing Bacteria (Streptococcus pneumoniae, Neisseria meningitidis, and Haemophilus influenzae Type b)
Hilyatuz Zahroh, Ahmad Ma’rup, Usman Sumo Friend Tambunan and Arli Aditya Parikesit
Drug Target Insights 2016:10 19-29
Original Research | Published on 01 Nov 2016



A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching
José R. Romero, Jessica A. Carballido, Ingrid Garbus, Viviana C. Echenique and Ignacio Ponzoni
Evolutionary Bioinformatics 2016:12 247-251
Original Research | Published on 30 Oct 2016



Structural Prediction and In Silico Physicochemical Characterization for Mouse Caltrin I and Bovine Caltrin Proteins
Ernesto J. Grasso, Adolfo E. Sottile and Carlos E. Coronel
Bioinformatics and Biology Insights 2016:10 225-236
Original Research | Published on 30 Oct 2016



A Modular Repository-based Infrastructure for Simulation Model Storage and Execution Support in the Context of In Silico Oncology and In Silico Medicine
Nikolaos A. Christodoulou, Nikolaos E. Tousert, Eleni Ch. Georgiadi, Katerina D. Argyri, Fay D. Misichroni and Georgios S. Stamatakos
Cancer Informatics 2016:15 219-235
Original Research | Published on 27 Oct 2016



IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment
Rohit Kumar Yadav and Haider Banka
Evolutionary Bioinformatics 2016:12 237-246
Original Research | Published on 27 Oct 2016



Discovering Outliers of Potential Drug Toxicities Using a Large-scale Data-driven Approach
Jake Luo and Ron A. Cisler
Cancer Informatics 2016:15 211-217
Original Research | Published on 26 Oct 2016



Cluster Analysis of p53 Binding Site Sequences Reveals Subsets with Different Functions
Ji-Hyun Lim, Natasha S. Latysheva, Richard D. Iggo, and Daniel Barker
Cancer Informatics 2016:15 199-209
Original Research | Published on 25 Oct 2016



Comparative Genomics of Amphibian-like Ranaviruses, Nucleocytoplasmic Large DNA Viruses of Poikilotherms
Stephen J. Price
Evolutionary Bioinformatics 2015:Suppl. 2 71-82
Original Research | Published on 25 Oct 2016



An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters
Stephen A. Ramsey
Bioinformatics and Biology Insights 2015:Suppl. 4 59-69
Methodology | Published on 25 Oct 2016



Iterative Fragmentation Improves the Detection of ChIP-seq Peaks for Inactive Histone Marks
Miklós Laczik, Jan Hendrickx, Anne-Clémence Veillard, Mustafa Tammoh, Sarah Marzi and Dominique Poncelet
Bioinformatics and Biology Insights 2016:10 209-224
Perspective | Published on 25 Oct 2016



Clinical Decision Support for Immunizations (CDSi): A Comprehensive, Collaborative Strategy
Noam H. Arzt
Biomedical Informatics Insights 2016:Suppl. 2 1-13
Commentary | Published on 19 Oct 2016



A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
Chen Chi, Rasif Ajwad, Qin Kuang and Pingzhao Hu
Cancer Informatics 2016:Suppl. 2 43-50
Methodology | Published on 09 Oct 2016



A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks
Jie Zhou, Pianyu Zhong and Tinghui Zhang
Evolutionary Bioinformatics 2016:12 229-235
Original Research | Published on 06 Oct 2016



Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods
Christopher J. Walsh, Pingzhao Hu, Jane Batt, and Claudia C. dos Santos
Cancer Informatics 2016:Suppl. 2 25-42
Review | Published on 03 Oct 2016



Approaching Long Genomic Regions and Large Recombination Rates with msParSm as an Alternative to MaCS
Carlos Montemuiño, Antonio Espinosa, Juan C. Moure, Gonzalo Vera, Porfidio Hernández and Sebastián Ramos-Onsins
Evolutionary Bioinformatics 2016:12 223-228
Software or database review | Published on 02 Oct 2016



Genomics Study of Mycobacterium tuberculosis Strains from Different Ethnic Populations in Taiwan
Horng-Yunn Dou, Yih-Yuan Chen, Ying-Tsong Chen, Jia-Ru Chang, Chien-Hsing Lin, Keh-Ming Wu, Ming-Shian Lin, Ih-Jen Su and Shih-Feng Tsai
Evolutionary Bioinformatics 2016:12 213-221
Original Research | Published on 27 Sep 2016



Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum
Stefan Simm, Klaus-Dieter Scharf, Sridharan Jegadeesan, Maria Luisa Chiusano, Nurit Firon and Enrico Schleiff
Bioinformatics and Biology Insights 2016:10 185-207
Original Research | Published on 26 Sep 2016



Novel Biomarker Candidates for Colorectal Cancer Metastasis: A Meta-analysis of In Vitro Studies
Nguyen Phuoc Long, Wun Jun Lee, Nguyen Truong Huy, Seul Ji Lee, Jeong Hill Park and Sung Won Kwon
Cancer Informatics 2016:Suppl. 4 11-17
Original Research | Published on 22 Sep 2016



Evolution of Synonymous Codon Usage in the Mitogenomes of Certain Species of Bilaterian Lineage with Special Reference to Chaetognatha
Sudeesh Karumathil, Vijaya R. Dirisala, Uthpala Srinadh, Valaboju Nikhil, N. Satya Sampath Kumar and Rahul R. Nair
Bioinformatics and Biology Insights 2016:10 167-184
Original Research | Published on 22 Sep 2016



Identifying Significant Features in Cancer Methylation Data Using Gene Pathway Segmentation
Zena M. Hira and Duncan F. Gillies
Cancer Informatics 2016:15 189-198
Methodology | Published on 20 Sep 2016



Overlapping Group Logistic Regression with Applications to Genetic Pathway Selection
Yaohui Zeng and Patrick Breheny
Cancer Informatics 2016:15 179-187
Methodology | Published on 15 Sep 2016



Virus Discovery Using Tick Cell Lines
Lesley Bell-Sakyi and Houssam Attoui
Evolutionary Bioinformatics 2016:Suppl. 2 31-34
Short Commentary | Published on 15 Sep 2016



Archival Collections are Important in the Study of the Biology, Diversity, and Evolution of Arboviruses
Alyssa T. Pyke and David Warrilow
Evolutionary Bioinformatics 2016:Suppl. 2 27-30
Commentary | Published on 14 Sep 2016



Discovering Related Clinical Concepts Using Large Amounts of Clinical Notes
Kavita Ganesan, Shane Lloyd and Vikren Sarkar
Biomedical Engineering and Computational Biology 2016:Suppl. 2 27-33
Original Research | Published on 07 Sep 2016



Biological Networks for Cancer Candidate Biomarkers Discovery
Wenying Yan, Wenjin Xue, Jiajia Chen and Guang Hu
Cancer Informatics 2016:Suppl. 3 1-7
Review | Published on 04 Sep 2016



Interaction Analysis of T7 RNA Polymerase with Heparin and Its Low Molecular Weight Derivatives – An In Silico Approach
Subhomoi Borkotoky, Chetan Kumar Meena and Ayaluru Murali
Bioinformatics and Biology Insights 2016:10 155-166
Original Research | Published on 29 Aug 2016



Molecular Evolution of the Yersinia Major Outer Membrane Protein C (OmpC)
Anna M. Stenkova, Evgeniya P. Bystritskaya, Konstantin V. Guzev, Alexander V. Rakin and Marina P. Isaeva
Evolutionary Bioinformatics 2016:12 185-191
Original Research | Published on 21 Aug 2016



Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map
Akimasa Seno, Tomonari Kasai, Masashi Ikeda, Arun Vaidyanath, Junko Masuda, Akifumi Mizutani, Hiroshi Murakami, Tetsuya Ishikawa and Masaharu Seno
Cancer Informatics 2016:15 163-178
Original Research | Published on 16 Aug 2016



In Silico Structure Prediction of Human Fatty Acid Synthase–Dehydratase: A Plausible Model for Understanding Active Site Interactions
Arun John, Vetrivel Umashankar, A. Samdani, Manoharan Sangeetha, Subramanian Krishnakumar and Perinkulam Ravi Deepa
Bioinformatics and Biology Insights 2016:10 143-154
Original Research | Published on 14 Aug 2016



OSG-GEM: Gene Expression Matrix Construction Using the Open Science Grid
William L. Poehlman, Mats Rynge, Chris Branton, D. Balamurugan and Frank A. Feltus
Bioinformatics and Biology Insights 2016:10 133-141
Technical Advance | Published on 02 Aug 2016



Computational Identification of Novel Genes: Current and Future Perspectives
Steffen Klasberg, Tristan Bitard-Feildel and Ludovic Mallet
Bioinformatics and Biology Insights 2016:10 121-131
Review | Published on 01 Aug 2016



Comparative Transcriptome Analysis Reveals Substantial Tissue Specificity in Human Aortic Valve
Jun Wang, Ying Wang, Weidong Gu, Buqing Ni, Haoliang Sun, Tong Yu, Wanjun Gu, Liang Chen and Yongfeng Shao
Evolutionary Bioinformatics 2016:12 175-184
Original Research | Published on 31 Jul 2016



Pathway-Informed Classification System (PICS) for Cancer Analysis Using Gene Expression Data
Michael R Young, and David L Craft
Cancer Informatics 2016:15 151-161
Original Research | Published on 27 Jul 2016




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