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Bioinformatics

Range of open access peer reviewed Bioinformatics journals & associated research articles. Read full text articles or submit your research for publishing


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Results 1-50 of 1689 for Bioinformatics

Popmarker: Identifying Phylogenetic Markers at the Population Level
Huei-Mien Ke, Chun-Ping Yu, Yu-Ching Liu, Isheng J Tsai
Evolutionary Bioinformatics 2017:13 1176934317724404
Review | Published on 16 Aug 2017



Embedded-Based Graphics Processing Unit Cluster Platform for Multiple Sequence Alignments
Jyh-Da Wei, Hui-Jun Cheng, Chun-Yuan Lin, Jin Ye, Kuan-Yu Yeh
Evolutionary Bioinformatics 2017:13 1176934317724764
Review | Published on 08 Aug 2017



Multiple Testing in the Context of Gene Discovery in Sickle Cell Disease Using Genome-Wide Association Studies
Kevin H.M. Kuo
Genomics Insights 2017:10 1178631017721178
Review | Published on 01 Aug 2017



Consistency and Variability of DNA Methylation in Women During Puberty, Young Adulthood, and Pregnancy
Su Chen, Nandini Mukherjee, Vimala Devi Janjanam, S Hasan Arshad, Ramesh J Kurukulaaratchy, John W Holloway, Hongmei Zhang, Wilfried Karmaus
Genetics & Epigenetics 2017:9 1179237X17721540
Original Research | Published on 28 Jul 2017



Immuno-Oncology Integrative Networks: Elucidating the Influences of Osteosarcoma Phenotypes
Ankush Sharma, Enrico Capobianco
Cancer Informatics 2017:16 1176935117721691
Review | Published on 26 Jul 2017



Linear-In-Flux-Expressions Methodology: Toward a Robust Mathematical Framework for Quantitative Systems Pharmacology Simulators
Sean T McQuade, Ruth E Abrams, Jeffrey S Barrett, Benedetto Piccoli, Karim Azer
Gene Regulation and Systems Biology 2017:11 1177625017711414
Review | Published on 26 Jul 2017



Reverse Nearest Neighbor Search on a Protein-Protein Interaction Network to Infer Protein-Disease Associations
Apichat Suratanee, Kitiporn Plaimas
Bioinformatics and Biology Insights 2017:11 1177932217720405
Original Research | Published on 13 Jul 2017



Prediction With Dimension Reduction of Multiple Molecular Data Sources for Patient Survival
Adam Kaplan, Eric F Lock
Cancer Informatics 2017:16 1176935117718517
Methodology | Published on 11 Jul 2017



Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genus , family
Aneta Gubala, Susan Walsh, Jane McAllister, Richard Weir, Steven Davis, Lorna Melville, Ian Mitchell, Dieter Bulach, Penny Gauci, Alex Skvortsov, David Boyle
Evolutionary Bioinformatics 2017:13 1176934317713484
Review | Published on 11 Jul 2017



The Impact of Collisions on the Ability to Detect Rare Mutant Alleles Using Barcode-Type Next-Generation Sequencing Techniques
Jenna VanLiere Canzoniero, Karen Cravero, Ben Ho Park
Cancer Informatics 2017:16 1176935117719236
Original Research | Published on 10 Jul 2017



Insights Into Signaling in Cell-Based Therapy for Heart Disease
Angela C Rieger, Bryon A Tompkins, Monisha Banerjee, Makoto Natsumeda, Victoria Florea, Ivonne H Schulman
Signal Transduction Insights 2017:6 1178643417717688
Review | Published on 10 Jul 2017



An Assessment of Database-Validated microRNA Target Genes in Normal Colonic Mucosa: Implications for Pathway Analysis
Martha L Slattery, Jennifer S Herrick, John R Stevens, Roger K Wolff, Lila E Mullany
Cancer Informatics 2017:16 1176935117716405
Original Research | Published on 23 Jun 2017



Prognostic Impact of Urokinase Plasminogen Activator Receptor Expression in Pancreatic Cancer: Malignant Versus Stromal Cells
Susanna WL de Geus, Victor M Baart, Martin C Boonstra, Peter JK Kuppen, Hendrica AJM Prevoo, Andrew P Mazar, Bert A Bonsing, Hans Morreau, Cornelis JH van de Velde, Alexander L Vahrmeijer, Cornelis FM Sier
Biomarker Insights 2017:12 1177271917715443
Review | Published on 22 Jun 2017



A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation
Lisa M Gandy, Jordan Gumm, Amanda L Blackford, Elana J Fertig, Luis A Diaz
Cancer Informatics 2017:16 1176935117711940
Original Research | Published on 22 Jun 2017



A Quantitative Systems Pharmacology Platform to Investigate the Impact of Alirocumab and Cholesterol-Lowering Therapies on Lipid Profiles and Plaque Characteristics
Jeffrey E Ming, Ruth E Abrams, Derek W Bartlett, Mengdi Tao, Tu Nguyen, Howard Surks, Katherine Kudrycki, Ananth Kadambi, Christina M Friedrich, Nassim Djebli, Britta Goebel, Alex Koszycki, Meera Varshnaya, Joseph Elassal, Poulabi Banerjee, William J Sasiela, Michael J Reed, Jeffrey S Barrett, Karim Azer
Gene Regulation and Systems Biology 2017:11 1177625017710941
Original Research | Published on 22 Jun 2017



Making Meaningful Clinical Use of Biomarkers
Matthew J Selleck, Maheswari Senthil, Nathan R Wall
Biomarker Insights 2017:12 1177271917715236
Review | Published on 19 Jun 2017



RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes
Jiye Kim, Kyong Mi Jun, Joung Sug Kim, Songhwa Chae, Yoon-Mok Pahk, Tae-Ho Lee, Soo-In Sohn, Soo In Lee, Myung-Ho Lim, Chang-Kug Kim, Yoonkang Hur, Baek Hie Nahm, Yeon-Ki Kim
Evolutionary Bioinformatics 2017:13 1176934317715421
Original Research | Published on 19 Jun 2017



Genome-Wide Identification and Comparative Analysis of Albumin Family in Vertebrates
Shugang Li, Yiping Cao, Fang Geng
Evolutionary Bioinformatics 2017:13 1176934317716089
Original Research | Published on 19 Jun 2017



Conservation of Repeats at the Mammalian KCNQ1OT1-CDKN1C Region Suggests a Role in Genomic Imprinting
Marcos De Donato, Tanveer Hussain, Hectorina Rodulfo, Sunday O Peters, Ikhide G Imumorin, Bolaji N Thomas
Evolutionary Bioinformatics 2017:13 1176934317715238
Original Research | Published on 16 Jun 2017



CellTrans: An R Package to Quantify Stochastic Cell State Transitions
Thomas Buder, Andreas Deutsch, Michael Seifert, Anja Voss-Böhme
Bioinformatics and Biology Insights 2017:11 1177932217712241
Original Research | Published on 16 Jun 2017



The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data
Eunji Kim, Ivan Ivanov, Jianping Hua, Johanna W Lampe, Meredith AJ Hullar, Robert S Chapkin, Edward R Dougherty
Cancer Informatics 2017:16 1176935117710530
Methodology | Published on 12 Jun 2017



A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major
Larissa Catharina, Carlyle Ribeiro Lima, Alexander Franca, Ana Carolina Ramos Guimarães, Marcelo Alves-Ferreira, Pierre Tuffery, Philippe Derreumaux, Nicolas Carels
Bioinformatics and Biology Insights 2017:11 1177932217712471
Methodology | Published on 12 Jun 2017



Using Transfer Learning for Improved Mortality Prediction in a Data-Scarce Hospital Setting
Thomas Desautels, Jacob Calvert, Jana Hoffman, Qingqing Mao, Melissa Jay, Grant Fletcher, Chris Barton, Uli Chettipally, Yaniv Kerem, Ritankar Das
Biomedical Informatics Insights 2017:9 1178222617712994
Original Research | Published on 12 Jun 2017



Optical Coherence Tomography Technology and Quality Improvement Methods for Optical Coherence Tomography Images of Skin: A Short Review
Saba Adabi, Zahra Turani, Emad Fatemizadeh, Anne Clayton, Mohammadreza Nasiriavanaki
Biomedical Engineering and Computational Biology 2017:8 1179597217713475
Short Review | Published on 12 Jun 2017



Tumor RAS Gene Expression Levels Are Influenced by the Mutational Status of RAS Genes and Both Upstream and Downstream RAS Pathway Genes
Robert M Stephens, Ming Yi, Bailey Kessing, Dwight V Nissley, Frank McCormick
Cancer Informatics 2017:16 1176935117711944
Original Research | Published on 08 Jun 2017



A Transcriptional Regulatory Role for the Membrane Type-1 Matrix Metalloproteinase in Carcinogen-Induced Inflammasome Gene Expression
Samuel Sheehy, Borhane Annabi
Gene Regulation and Systems Biology 2017:11 1177625017713996
Original Research | Published on 08 Jun 2017



Overexpression and Knockdown of Hypoxia-Inducible Factor 1 Disrupt the Expression of Steroidogenic Enzyme Genes and Early Embryonic Development in Zebrafish
Tianfeng Tan, Richard Man Kit Yu, Rudolf Shiu Sun Wu, Richard Yuen Chong Kong
Gene Regulation and Systems Biology 2017:11 1177625017713193
Original Research | Published on 08 Jun 2017



Leveraging Food and Drug Administration Adverse Event Reports for the Automated Monitoring of Electronic Health Records in a Pediatric Hospital
Huaxiu Tang, Imre Solti, Eric Kirkendall, Haijun Zhai, Todd Lingren, Jaroslaw Meller, Yizhao Ni
Biomedical Informatics Insights 2017:9 1178222617713018
Original Research | Published on 08 Jun 2017



Influence of Circulating Endothelin-1 and Asymmetric Dimethylarginine on Whole Brain Circulation Time in Multiple Sclerosis
Lucia Monti, Lucia Morbidelli, Lorenzo Bazzani, Alessandro Rossi
Biomarker Insights 2017:12 1177271917712514
Original Research | Published on 06 Jun 2017



Data-Independent Acquisition and Parallel Reaction Monitoring Mass Spectrometry Identification of Serum Biomarkers for Ovarian Cancer
Navin Rauniyar, Gang Peng, TuKiet T Lam, Hongyu Zhao, Gil Mor, Kenneth R Williams
Biomarker Insights 2017:12 1177271917710948
Original Research | Published on 05 Jun 2017



Lung Cancer Pathological Image Analysis Using a Hidden Potts Model
Qianyun Li, Faliu Yi, Tao Wang, Guanghua Xiao, Faming Liang
Cancer Informatics 2017:16 1176935117711910
Original Research | Published on 05 Jun 2017



Immune Checkpoint Inhibition and the Prevalence of Autoimmune Disorders Among Patients With Lung and Renal Cancer
Sherif M El-Refai, Joshua D Brown, Esther P Black, Jeffery C Talbert
Cancer Informatics 2017:16 1176935117712520
Original Research | Published on 01 Jun 2017



Sequence Analysis and Phylogenetic Studies of Hypoxia-Inducible Factor-1α
Jagadeesha Poyya, Chandrashekhar G Joshi, D Jagadeesha Kumar, HG Nagendra
Cancer Informatics 2017:16 1176935117712242
Original Research | Published on 31 May 2017



Mechanistic Modelling of Drug-Induced Liver Injury: Investigating the Role of Innate Immune Responses
Lisl KM Shoda, Christina Battista, Scott Q Siler, David S Pisetsky, Paul B Watkins, Brett A Howell
Gene Regulation and Systems Biology 2017:11 1177625017696074
Review | Published on 30 May 2017



Phylogenetic Analysis of Nuclear-Encoded RNA Maturases
Sunita Malik, KC Upadhyaya, SM Paul Khurana
Evolutionary Bioinformatics 2017:13 1176934317710945
Original Research | Published on 29 May 2017



Effects of High-Fat Feeding on Skeletal Muscle Gene Expression in Diabetic Goto-Kakizaki Rats
Jing Nie, Debra C DuBois, Bai Xue, William J Jusko, Richard R Almon
Gene Regulation and Systems Biology 2017:11 1177625017710009
Original Research | Published on 29 May 2017



Quantitative Study of Thermal Disturbances Due to Nonuniformly Perfused Tumors in Peripheral Regions of Women’s Breast
Akshara Makrariya, Neeru Adlakha
Cancer Informatics 2017:16 1176935117700894
Original Research | Published on 15 May 2017



Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy
Wasiu Opeyemi Oduola, Xiangfang Li, Chang Duan, Lijun Qian, Fen Wu, Edward R Dougherty
Cancer Informatics 2017:16 1176935117706888
Review | Published on 10 May 2017



Applying Multivariate Adaptive Splines to Identify Genes With Expressions Varying After Diagnosis in Microarray Experiments
Fenghai Duan, Ye Xu
Cancer Informatics 2017:16 1176935117705381
Review | Published on 04 May 2017



Prepartal Energy Intake Alters Blood Polymorphonuclear Leukocyte Transcriptome During the Peripartal Period in Holstein Cows
A Agrawal, MJ Khan, DE Graugnard, M Vailati-Riboni, SL Rodriguez-Zas, JS Osorio, JJ Loor
Bioinformatics and Biology Insights 2017:11 1177932217704667
Original Research | Published on 28 Apr 2017



Performance of Hidden Markov Models in Recovering the Standard Classification of Glycoside Hydrolases
Mariana Fonseca Rossi, Beatriz Mello, Carlos G Schrago
Evolutionary Bioinformatics 2017:13 1176934317703401
Original Research | Published on 20 Apr 2017



The Synergistic Role of Light-Feeding Phase Relations on Entraining Robust Circadian Rhythms in the Periphery
Seul-A Bae, Ioannis P Androulakis
Gene Regulation and Systems Biology 2017:11 1177625017702393
Review | Published on 20 Apr 2017



In Silico Approach for Characterization and Comparison of Repeats in the Genomes of Oil and Date Palms
Jaire Alves Ferreira Filho, Lucas Soares de Brito, André Pereira Leão, Alexandre Alonso Alves, Eduardo Fernandes Formighieri, Manoel Teixeira Souza
Bioinformatics and Biology Insights 2017:11 1177932217702388
Original Research | Published on 18 Apr 2017



Effects of Acute Exercise on Circulating Soluble Form of the Urokinase Receptor in Patients With Major Depressive Disorder
Anna Gustafsson, Filip Ventorp, Anita GM Wisén, Lars Ohlsson, Lennart Ljunggren, Åsa Westrin
Biomarker Insights 2017:12 1177271917704193
Original Research | Published on 12 Apr 2017



Integrative Analysis of MicroRNA-Mediated Gene Signatures and Pathways Modulating White Blood Cell Count in Childhood Acute Lymphoblastic Leukemia
Ritika Ramani, Gail Megason, Jason Schallheim, Cynthia Karlson, Vani Vijayakumar, Srinivasan Vijayakumar, Chindo Hicks
Biomarker Insights 2017:12 1177271917702895
Original Research | Published on 12 Apr 2017



miR-10a and miR-204 as a Potential Prognostic Indicator in Low-Grade Gliomas
Ju Cheol Son, Hyoung Oh Jeong, Deaui Park, Sang Gyoon No, Eun Kyeong Lee, Jaewon Lee, Hae Young Chung
Cancer Informatics 2017:16 1176935117702878
Original Research | Published on 12 Apr 2017



A mixture copula Bayesian network model for multimodal genomic data
Qingyang Zhang, Xuan Shi
Cancer Informatics 2017:16 1176935117702389
Methodology | Published on 12 Apr 2017



Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification
Richard J Allen, Cynthia J Musante
Gene Regulation and Systems Biology 2017:11 1177625017690133
Review | Published on 12 Apr 2017



Analysis of Individual Differences in Vaccine Pharmacovigilance Using VAERS Data and MedDRA System Organ Classes: A Use Case Study With Trivalent Influenza Vaccine
Jingcheng Du, Yi Cai, Yong Chen, Yongqun He, Cui Tao
Biomedical Informatics Insights 2017:9 1178222617700627
Review | Published on 11 Apr 2017



Bioinformatics Education in Pathology Training: Current Scope and Future Direction
Michael R Clay, Kevin E Fisher
Cancer Informatics 2017:16 1176935117703389
Review | Published on 10 Apr 2017




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