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JOURNAL

Evolutionary Bioinformatics


An international, peer reviewed, open access journal focusing on evolutionary bioinformatics.  The journal aims to support understanding of organismal form and function through use of molecular, genetic, genomic and proteomic data by giving due consideration to its evolutionary context.

Impact Factor: 1.500 (2016)

Editor in Chief: Dr. Dennis Wall

ISSN: 1176-9343

Processing Speed: High quality, constructive peer review and rapid editorial decision within an average of four weeks.



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On the Use of Bootstrapped Topologies in Coalescent-Based Bayesian MCMC Inference: A Comparison of Estimation and Computational Efficiencies
Allen G. Rodrigo, Peter Tsai and Helen Shearman
Evolutionary Bioinformatics 2009:5 97-105
Original Research | Published on 31 Jul 2009



PhyLIS: A Simple GNU/Linux Distribution for Phylogenetics and Phyloinformatics
Robert C. Thomson
Evolutionary Bioinformatics 2009:5 91-95
Short Report | Published on 30 Jul 2009



A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice
Yupeng Wang and Romdhane Rekaya
Evolutionary Bioinformatics 2009:5 81-90
Original Research | Published on 06 Jul 2009



Initial Implementation of a Comparative Data Analysis Ontology
Francisco Prosdocimi, Brandon Chisham, Enrico Pontelli, Julie D. Thompson and Arlin Stoltzfus
Evolutionary Bioinformatics 2009:5 47-66
Methodology | Published on 03 Jul 2009



A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies
Bastien Boussau, Laurent Guéguen and Manolo Gouy
Evolutionary Bioinformatics 2009:5 67-79
Methodology | Published on 25 Jun 2009



Phylogenetic Applications of the Minimum Contradiction Approach on Continuous Characters
Marc Thuillard and Didier Fraix-Burnet
Evolutionary Bioinformatics 2009:5 33-46
Original Research | Published on 11 Jun 2009



Phylogenetic Analyses Reveal Monophyletic Origin of the Ergot Alkaloid Gene dmaW in Fungi
Miao Liu, Daniel G. Panaccione and Christopher L. Schardl
Evolutionary Bioinformatics 2009:5 15-30
Original Research | Published on 04 Jun 2009



Evolution and Functional Diversification of the GLI Family of Transcription Factors in Vertebrates
Amir Ali Abbasi, Debbie K. Goode, Saneela Amir and Karl-Heinz Grzeschik
Evolutionary Bioinformatics 2009:5 5-13
Original Research | Published on 18 May 2009



REFGEN and TREENAMER: Automated Sequence Data Handling for Phylogenetic Analysis in the Genomic Era
Guy Leonard, Jamie R. Stevens and Thomas A. Richards
Evolutionary Bioinformatics 2009:5 1-4
Short Report | Published on 06 May 2009



The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics
Simon J. Greenhill, Robert Blust and Russell D. Gray
Evolutionary Bioinformatics 2008:4 271-283
Published on 03 Nov 2008



Evidence for a Complex Mosaic Genome Pattern in a Full-length Hepatitis C Virus Sequence
R.S. Ross, J. Verbeeck, S. Viazov, P. Lemey, M. Van Ranst and M. Roggendorf
Evolutionary Bioinformatics 2008:4 249-254
Published on 30 Oct 2008



Inconsistent Distances in Substitution Matrices can be Avoided by Properly Handling Hydrophobic Residues
J. Baussand and A. Carbone
Evolutionary Bioinformatics 2008:4 255-261
Published on 09 Oct 2008



Bayesian, Maximum Parsimony and UPGMA Models for Inferring the Phylogenies of Antelopes Using Mitochondrial Markers
Haseeb A. Khan, Ibrahim A. Arif, Ali H. Bahkali, Ahmad H. Al Farhan and Ali A. Al Homeidan
Evolutionary Bioinformatics 2008:4 263-270
Published on 06 Oct 2008



Minimum Contradiction Matrices in Whole Genome Phylogenies
Marc Thuillard
Evolutionary Bioinformatics 2008:4 237-247

Published on 21 Jul 2008



Estimation of Genetic Effects and Genotype-Phenotype Maps
Arnaud Le Rouzic and José M. Álvarez-Castro
Evolutionary Bioinformatics 2008:4 225-235
Published on 28 Jun 2008



Testing the Accuracy of Eukaryotic Phylogenetic Profiles for Prediction of Biological Function
Saurav Singh and Dennis P. Wall
Evolutionary Bioinformatics 2008:4 217-223
Published on 18 Jun 2008



Electrostatic and Functional Analysis of the Seven-Bladed WD β-Propellers
Najl V Valeyev, A Kristina Downing, John Sondek and Charlotte Deane
Evolutionary Bioinformatics 2008:4 203-216
Published on 13 Jun 2008



Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Nils Hallenberg and Karl ­Henrik Larsson
Evolutionary Bioinformatics 2008:4 193-201
Published on 26 May 2008



Exploring the Evolutionary History of the Differentially Expressed Genes between Human Populations: Action of Recent Positive Selection
Wei Zhang and M. Eileen Dolan
Evolutionary Bioinformatics 2008:4 171-179
Published on 15 May 2008



Maximum Gene-Support Tree
Yunfeng Shan and Xiu-Qing Li
Evolutionary Bioinformatics 2008:4 181-191
Published on 15 May 2008



Examining Ancient Inter-domain Horizontal Gene Transfer
Francisca C. Almeida, Magdalena Leszczyniecka, Paul B. Fisher and Rob DeSalle
Evolutionary Bioinformatics 2008:4 109-119
Published on 09 May 2008



Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology
Anthony Levasseur, Pierre Pontarotti, Olivier Poch and Julie D. Thompson
Evolutionary Bioinformatics 2008:4 121-137
Published on 08 May 2008



Dissection of Functional Residues in Receptor Activity-Modifying Proteins Through Phylogenetic and Statistical Analyses
Alfonso Benítez-Páez and Sonia Cárdenas-Brito
Evolutionary Bioinformatics 2008:4 153-169
Published on 28 Apr 2008



Assessing the Evolution of Gene Expression Using Microarray Data
Owen Z. Woody, Andrew C. Doxey and Brendan J. McConkey
Evolutionary Bioinformatics 2008:4 139-152
Published on 24 Apr 2008



Identifying Coevolving Partners from Paralogous Gene Families
Chen-Hsiang Yeang
Evolutionary Bioinformatics 2008:4 97-107
Published on 24 Apr 2008



The ABCs of MGR with DCJ
Zaky Adam and David Sankoff
Evolutionary Bioinformatics 2008:4 69-74
Published on 10 Apr 2008



Comparative Evolutionary Histories of the Fungal Chitinase Gene Family Reveal Non-Random Size Expansions and Contractions due to Adaptive Natural Selection
Magnus Karlsson and Jan Stenlid
Evolutionary Bioinformatics 2008:4 47-60
Published on 18 Mar 2008



Expected Anomalies in the Fossil Record
Mareike Fischer and Mike Steel
Evolutionary Bioinformatics 2008:4 61-67
Published on 18 Mar 2008



How to Summarize Estimates of Ancestral Divergence Times
David A. Morrison
Evolutionary Bioinformatics 2008:4 75-95
Published on 18 Mar 2008



A Simple Derivation of the Distribution of Pairwise Local Protein Sequence Alignment Scores
Olivier Bastien
Evolutionary Bioinformatics 2008:4 41-45
Published on 14 Feb 2008



Why Should We Care About Molecular Coevolution?
Francisco M. Codoñer and Mario A. Fares
Evolutionary Bioinformatics 2008:4 29-38
Published on 14 Feb 2008



Detecting Microsatellites in Genome Data: Variance in Definitions and Bioinformatic Approaches Cause Systematic Bias
Angelika Merkel and Neil J. Gemmell
Evolutionary Bioinformatics 2008:4 1-6
Published on 09 Feb 2008



Reverse Conservation Analysis Reveals the Specificity Determining Residues of Cytochrome P450 Family 2 (CYP 2)
Tai-Sung Lee
Evolutionary Bioinformatics 2008:4 7-16
Published on 09 Feb 2008



SPR Distance Computation for Unrooted Trees
Glenn Hickey, Frank Dehne, Andrew Rau-Chaplin and Christian Blouin
Evolutionary Bioinformatics 2008:4 17-27
Published on 09 Feb 2008



Evolution of the Influenza A Virus: Some New Advances
Raul Rabadan and Harlan Robins
Evolutionary Bioinformatics Online 2007:3 299-307
Published on 30 Jan 2008



The 2006 NESCent Phyloinformatics Hackathon: A Field Report
Hilmar Lapp, Sendu Bala, James P. Balhoff, Amy Bouck, Naohisa Goto, Mark Holder, Richard Holland, Alisha Holloway, Toshiaki Katayama, Paul O. Lewis, Aaron J. Mackey, Brian I. Osborne, William H. Piel, Sergei L. Kosakovsky Pond, Art F.Y. Poon, Wei-Gang Qiu et al
Evolutionary Bioinformatics 2007:3 287-296
Published on 14 Dec 2007



Phylogenetic Study of the Evolution of PEP-Carboxykinase
Sanjukta Aich and Louis T.J. Delbaere
Evolutionary Bioinformatics 2007:3 333-340
Published on 11 Dec 2007



Efficient Tree Searches with Available Algorithms
Gonzalo Giribet
Evolutionary Bioinformatics 2007:3 341-356
Published on 12 Nov 2007



Structural Evolution of the ABC Transporter Subfamily B
Flanagan, J.U. and Huber, T.
Evolutionary Bioinformatics 2007:3 309-316
Published on 08 Nov 2007



An Insulin-Like Modular Basis for the Evolution of Glucose Transporters (GLUT) with Implications for Diabetes
Robert Root-Bernstein
Evolutionary Bioinformatics 2007:3 317-331
Published on 15 Oct 2007



Minimizing Contradictions on Circular Order of Phylogenic Trees
Marc Thuillard
Evolutionary Bioinformatics 2007:3 267-277
Published on 11 Oct 2007



Selection Effects on the Positioning of Genes and Gene Structures from the Interplay of Replication and Transcription in Bacterial Genomes
Kazuharu Arakawa and Masaru Tomita
Evolutionary Bioinformatics 2007:3 279-286
Published on 09 Oct 2007



Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily
Robin G. Allaby and Mathew Woodwark
Evolutionary Bioinformatics 2007:3 357-370
Published on 26 Sep 2007



Non-Molecular-Clock-Like Evolution following Viral Origins in Homo sapiens
Wendy Mok, Kelly Seto and Jon Stone
Evolutionary Bioinformatics 2007:3 263-266
Published on 26 Sep 2007



Underlying Principles of Natural Selection in Network Evolution: Systems Biology Approach
Bor-Sen Chen and Wei-Sheng Wu
Evolutionary Bioinformatics 2007:3 245-262
Published on 26 Sep 2007



Hedging Our Bets: The Expected Contribution of Species to Future Phylogenetic Diversity
Mike Steel, Aki Mimoto and Arne Ø. Mooers
Evolutionary Bioinformatics 2007:3 237-244
Published on 25 Sep 2007



Genome Signatures, Self-Organizing Maps and Higher Order Phylogenies: A Parametric Analysis
Derek Gatherer
Evolutionary Bioinformatics 2007:3 211-236
Published on 17 Sep 2007



The GC Skew Index: A Measure of Genomic Compositional Asymmetry and the Degree of Replicational Selection
Kazuharu Arakawa and Masaru Tomita
Evolutionary Bioinformatics 2007:3 159-168
Published on 06 Sep 2007



Interactions Between SNP Alleles at Multiple Loci and Variation in Skin Pigmentation in 122 Caucasians
Sumiko Anno, Takashi Abe, Koichi Sairyo, Susumu Kudo, Takushi Yamamoto, Koretsugu Ogata and Vijay K. Goel
Evolutionary Bioinformatics 2007:3 169-178
Published on 06 Sep 2007



Identifcation of Novel Retroid Agents in Danio rerio, Oryzias latipes, Gasterosteus aculeatus and Tetraodon nigroviridis
Holly A. Basta, Alex J. Buzak and Marcella A. McClure
Evolutionary Bioinformatics 2007:3 179-195
Published on 06 Sep 2007





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