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Evolutionary Bioinformatics

MySSP: Non-stationary evolutionary sequence simulation, including indels

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Evolutionary Bioinformatics 2005:1 81-83

Published on 26 Feb 2007


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Michael S. Rosenberg

Center for Evolutionary Functional Genomics and the School of Life Sciences, Arizona State University, Tempe, AZ, USA

Abstract: MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.



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