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Some genetic systems frequently present ambiguous data that cannot be straightforwardly analyzed with common methods of population genetics. Two possibilities arise to analyze such data: one is the arbitrary simplification of the data and the other is the development of methods adapted to such ambiguous data. In this article, we present an attempt at such a development, the UNIFORMAT grammar and the GENE[RATE] tools, highlighting the specific aspects and the adaptations required to analyze ambiguous nominal data in population genetics.
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